Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| HNSC | TCGA-CV-7421-01A | TCGA-CV-7421 | TPX2|DUSP15 | TPX2 | DUSP15 | 20 | 20 | 1 | -1 | 8 | 7 | 6 | 0.77 | 30347982 | 30438479 | tier1 | Out-of-frame | 18523 | NA | 0 |
| HNSC | TCGA-CN-6992-01A | TCGA-CN-6992 | TPX2|UNC5D | TPX2 | UNC5D | 20 | 8 | 1 | 1 | 6 | 8 | 7 | 0.091 | 30330450 | 35406810 | tier1 | 5UTR-CDS | 18531 | NA | 0 |
| HNSC | TCGA-QK-A64Z-01A | TCGA-QK-A64Z | TRA2B|HRH4 | TRA2B | HRH4 | 3 | 18 | -1 | 1 | 20 | 13 | 12 | 0.39 | 185655613 | 22048752 | tier1 | Out-of-frame | 18538 | NA | 0 |
| HNSC | TCGA-CV-7422-01A | TCGA-CV-7422 | TRABD|DDR2 | TRABD | DDR2 | 22 | 1 | 1 | 1 | 5 | 14 | 3 | 3.2 | 50624405 | 162625001 | tier1 | 5UTR-5UTR | 18540 | NA | 0 |
| HNSC | TCGA-CV-6953-01A | TCGA-CV-6953 | TRAPPC9|PTK2 | TRAPPC9 | PTK2 | 8 | 8 | -1 | -1 | 11 | 5 | 4 | 0.79 | 141415676 | 141696793 | tier1 | In-frame | 18585 | NA | 0 |
| HNSC | TCGA-CV-A45X-01A | TCGA-CV-A45X | TRAPPC9|SLC30A8 | TRAPPC9 | SLC30A8 | 8 | 8 | -1 | 1 | 3 | 1 | 1 | 0.25 | 141436714 | 118159058 | tier2 | CDS-5UTR | 18586 | NA | 0 |
| HNSC | TCGA-T2-A6WX-01A | TCGA-T2-A6WX | TRPM4|PPFIA3 | TRPM4 | PPFIA3 | 19 | 19 | 1 | 1 | 8 | 13 | 12 | 0.056 | 49675365 | 49636258 | tier1 | Out-of-frame | 18732 | NA | 0 |
| HNSC | TCGA-CV-7407-01A | TCGA-CV-7407 | TSHZ3|IL29 | TSHZ3 | IL29 | 19 | 19 | -1 | 1 | 5 | 13 | 11 | 1.9 | 31840086 | 39787445 | tier1 | Out-of-frame | 18777 | NA | 0 |
| HNSC | TCGA-UP-A6WW-01A | TCGA-UP-A6WW | TSPAN5|MAPK10 | TSPAN5 | MAPK10 | 4 | 4 | -1 | -1 | 14 | 22 | 17 | 1.7 | 99579297 | 86938528 | tier1 | Out-of-frame | 18802 | NA | 0 |
| HNSC | TCGA-CN-4735-01A | TCGA-CN-4735 | TTC7B|PPP2R5C | TTC7B | PPP2R5C | 14 | 14 | -1 | 1 | 8 | 5 | 1 | 0.56 | 91196419 | 102323023 | tier2 | Out-of-frame | 18889 | NA | 0 |
| HNSC | TCGA-CV-7261-01A | TCGA-CV-7261 | TUFT1|CGN | TUFT1 | CGN | 1 | 1 | 1 | 1 | 14 | 6 | 5 | 0.046 | 151512902 | 151509206 | tier1 | In-frame | 18953 | NA | 0 |
| HNSC | TCGA-F7-A61V-01A | TCGA-F7-A61V | TXNDC15|ODZ2 | TXNDC15 | ODZ2 | 5 | 5 | 1 | 1 | 4 | 1 | 1 | 1.2 | 134210220 | 167379593 | tier2 | In-frame | 18985 | NA | 0 |
| HNSC | TCGA-CR-7389-01A | TCGA-CR-7389 | UBE3C|PTPRN2 | UBE3C | PTPRN2 | 7 | 7 | 1 | -1 | 29 | 18 | 17 | 0.072 | 156932032 | 157997965 | tier1 | Out-of-frame | 19109 | NA | 0 |
| HNSC | TCGA-T2-A6X0-01A | TCGA-T2-A6X0 | UFSP2|EPHA4 | UFSP2 | EPHA4 | 4 | 2 | -1 | -1 | 3 | 4 | 4 | 1.3 | 186347020 | 222365892 | tier1 | Out-of-frame | 19189 | NA | 0 |
| HNSC | TCGA-CV-7421-01A | TCGA-CV-7421 | USP39|CD8B | USP39 | CD8B | 2 | 2 | 1 | -1 | 5 | 4 | 4 | 0.01 | 85848702 | 87049497 | tier1 | Out-of-frame | 19379 | NA | 0 |
| HNSC | TCGA-D6-6826-01A | TCGA-D6-6826 | VGLL4|CHL1 | VGLL4 | CHL1 | 3 | 3 | -1 | 1 | 57 | 33 | 30 | 3.7 | 11643307 | 419501 | tier1 | In-frame | 19555 | NA | 0 |
| HNSC | TCGA-CV-7091-01A | TCGA-CV-7091 | XPR1|TOR3A | XPR1 | TOR3A | 1 | 1 | 1 | 1 | 62 | 54 | 52 | 2.9 | 180805852 | 179066963 | tier1 | In-frame | 19980 | NA | 0 |
| HNSC | TCGA-MZ-A5BI-01A | TCGA-MZ-A5BI | ZFPM2|ANXA13 | ZFPM2 | ANXA13 | 8 | 8 | 1 | -1 | 45 | 56 | 47 | 0.022 | 106646585 | 124693599 | tier1 | Out-of-frame | 20286 | NA | 0 |
| HNSC | TCGA-CV-A465-01A | TCGA-CV-A465 | ZNF267|GPR180 | ZNF267 | GPR180 | 16 | 13 | 1 | 1 | 20 | 7 | 7 | 0.19 | 31896577 | 95273332 | tier1 | In-frame | 20429 | NA | 0 |
| HNSC | TCGA-MT-A7BN-01A | TCGA-MT-A7BN | ZNF529|FAM187B | ZNF529 | FAM187B | 19 | 19 | -1 | -1 | 2 | 2 | 1 | 0.75 | 37063235 | 35716115 | tier2 | In-frame | 20539 | NA | 0 |
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