Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| HNSC | TCGA-CN-6018-01A | TCGA-CN-6018 | SMURF1|GJC3 | SMURF1 | GJC3 | 7 | 7 | -1 | -1 | 6 | 1 | 1 | 0.23 | 98741349 | 99521226 | tier2 | In-frame | 16444 | NA | 0 |
| HNSC | TCGA-DQ-7591-01A | TCGA-DQ-7591 | SNRNP40|EPB41 | SNRNP40 | EPB41 | 1 | 1 | -1 | 1 | 2 | 2 | 1 | 0.34 | 31762101 | 29365766 | tier3 | Out-of-frame | 16499 | NA | 0 |
| HNSC | TCGA-BB-4223-01A | TCGA-BB-4223 | SPG11|JMJD7 | SPG11 | JMJD7 | 15 | 15 | -1 | 1 | 10 | 3 | 3 | 1.5 | 44881450 | 42126938 | tier1 | CDS-5UTR | 16722 | NA | 0 |
| HNSC | TCGA-CV-7418-01A | TCGA-CV-7418 | SRGAP3|ATP2B2 | SRGAP3 | ATP2B2 | 3 | 3 | -1 | -1 | 2 | 1 | 1 | 0.065 | 9290569 | 10491546 | tier3 | CDS-5UTR | 16848 | NA | 0 |
| HNSC | TCGA-BB-4224-01A | TCGA-BB-4224 | SRPK2|KIAA1324L | SRPK2 | KIAA1324L | 7 | 7 | -1 | -1 | 16 | 3 | 3 | 0.9 | 104844075 | 86509846 | tier1 | Out-of-frame | 16874 | NA | 0 |
| HNSC | TCGA-MZ-A7D7-01A | TCGA-MZ-A7D7 | STX3|PLEKHA7 | STX3 | PLEKHA7 | 11 | 11 | 1 | -1 | 2 | 2 | 2 | 1.1 | 59523108 | 16816261 | tier2 | Out-of-frame | 17130 | NA | 0 |
| HNSC | TCGA-CQ-6229-01A | TCGA-CQ-6229 | SYNE2|ITPK1 | SYNE2 | ITPK1 | 14 | 14 | 1 | -1 | 30 | 10 | 10 | 0.061 | 64486811 | 93460342 | tier1 | In-frame | 17247 | NA | 0 |
| HNSC | TCGA-DQ-7589-01A | TCGA-DQ-7589 | TAF1A|SLC12A7 | TAF1A | SLC12A7 | 1 | 5 | -1 | -1 | 2 | 1 | 1 | 1.2 | 222757470 | 1085588 | tier3 | In-frame | 17319 | NA | 0 |
| HNSC | TCGA-DQ-7589-01A | TCGA-DQ-7589 | TBC1D23|ABI3BP | TBC1D23 | ABI3BP | 3 | 3 | 1 | -1 | 2 | 2 | 2 | 0.25 | 100000691 | 100645325 | tier3 | In-frame | 17484 | NA | 0 |
| HNSC | TCGA-HL-7533-01A | TCGA-HL-7533 | TBL1X|GPR143 | TBL1X | GPR143 | X | X | 1 | -1 | 55 | 44 | 36 | 4.5 | 9469889 | 9711713 | tier1 | 5UTR-CDS | 17541 | NA | 0 |
| HNSC | TCGA-CV-6960-01A | TCGA-CV-6960 | THBS1|AGBL1 | THBS1 | AGBL1 | 15 | 15 | 1 | 1 | 3035 | 2290 | 2139 | 0.069 | 39881555 | 86790902 | tier1 | Out-of-frame | 17765 | NA | 0 |
| HNSC | TCGA-CN-5370-01A | TCGA-CN-5370 | THBS1|NRG1 | THBS1 | NRG1 | 15 | 8 | 1 | 1 | 53 | 31 | 30 | 0.24 | 39876623 | 32585467 | tier1 | Out-of-frame | 17766 | NA | 0 |
| HNSC | TCGA-CR-7367-01A | TCGA-CR-7367 | TIAM1|PCBP3 | TIAM1 | PCBP3 | 21 | 21 | -1 | 1 | 13 | 11 | 11 | 0.16 | 32711558 | 47316122 | tier1 | 5UTR-CDS | 17821 | NA | 0 |
| HNSC | TCGA-CR-6478-01A | TCGA-CR-6478 | TMBIM4|TMEM131 | TMBIM4 | TMEM131 | 12 | 2 | -1 | -1 | 67 | 20 | 19 | 0.7 | 66563635 | 98430851 | tier1 | Out-of-frame | 17884 | NA | 0 |
| HNSC | TCGA-CV-6961-01A | TCGA-CV-6961 | TMED10|TTLL5 | TMED10 | TTLL5 | 14 | 14 | -1 | 1 | 133 | 72 | 65 | 0.69 | 75643058 | 76286350 | tier4 | In-frame | 17917 | non-validated | 0 |
| HNSC | TCGA-CQ-7072-01A | TCGA-CQ-7072 | TMEM117|KIF16B | TMEM117 | KIF16B | 12 | 20 | 1 | -1 | 18 | 16 | 16 | 1.8 | 44537427 | 16293063 | tier1 | In-frame | 17936 | NA | 0 |
| HNSC | TCGA-F7-7848-01A | TCGA-F7-7848 | TMPRSS11D|SPINK2 | TMPRSS11D | SPINK2 | 4 | 4 | -1 | -1 | 2 | 3 | 3 | 0.92 | 68749644 | 57677960 | tier2 | Out-of-frame | 18082 | NA | 0 |
| HNSC | TCGA-P3-A6T8-01A | TCGA-P3-A6T8 | TMPRSS2|HSF2BP | TMPRSS2 | HSF2BP | 21 | 21 | -1 | -1 | 85 | 101 | 92 | 0.76 | 42843733 | 44949842 | tier1 | In-frame | 18277 | NA | 0 |
| HNSC | TCGA-CN-5369-01A | TCGA-CN-5369 | TNFSF14|GRAMD1A | TNFSF14 | GRAMD1A | 19 | 19 | -1 | 1 | 5 | 3 | 3 | 0.024 | 6667124 | 35510095 | tier1 | In-frame | 18345 | NA | 0 |
| HNSC | TCGA-CN-5356-01A | TCGA-CN-5356 | TPT1|ERBB3 | TPT1 | ERBB3 | 13 | 12 | -1 | 1 | 2 | 4 | 2 | 2.8 | 45911313 | 56492035 | tier4 | 3UTR-5UTR | 18504 | NA | 0 |
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