Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| HNSC | TCGA-BA-6871-01A | TCGA-BA-6871 | SCNN1A|DCP1B | SCNN1A | DCP1B | 12 | 12 | -1 | -1 | 60 | 10 | 9 | 0.022 | 6457893 | 2055452 | tier2 | In-frame | 15431 | NA | 0 |
| HNSC | TCGA-TN-A7HJ-01A | TCGA-TN-A7HJ | SENP5|KCNMB3 | SENP5 | KCNMB3 | 3 | 3 | 1 | -1 | 3 | 1 | 1 | 1.3 | 196657771 | 178962481 | tier4 | NA | 15577 | NA | 0 |
| HNSC | TCGA-CQ-6221-01A | TCGA-CQ-6221 | SGCD|LCP2 | SGCD | LCP2 | 5 | 5 | 1 | -1 | 8 | 3 | 3 | 1.6 | 155771687 | 169720376 | tier1 | In-frame | 15775 | NA | 0 |
| HNSC | TCGA-BA-6868-01B | TCGA-BA-6868 | SGMS1|GRID1 | SGMS1 | GRID1 | 10 | 10 | -1 | -1 | 15 | 12 | 11 | 2.7 | 52226650 | 87675996 | tier1 | 5UTR-CDS | 15782 | NA | 0 |
| HNSC | TCGA-CQ-A4CI-01A | TCGA-CQ-A4CI | SH2D3A|GPM6A | SH2D3A | GPM6A | 19 | 4 | -1 | -1 | 21 | 17 | 16 | 0.23 | 6767398 | 176573138 | tier1 | 5UTR-CDS | 15800 | NA | 0 |
| HNSC | TCGA-CV-6941-01A | TCGA-CV-6941 | SH3BP1|CACNA1I | SH3BP1 | CACNA1I | 22 | 22 | 1 | 1 | 5 | 7 | 7 | 0.084 | 38039795 | 40057970 | tier1 | In-frame | 15807 | NA | 0 |
| HNSC | TCGA-CQ-A4C7-01A | TCGA-CQ-A4C7 | SIK3|CNTN5 | SIK3 | CNTN5 | 11 | 11 | -1 | 1 | 5 | 1 | 1 | 0.12 | 116797935 | 100126492 | tier4 | In-frame | 15917 | NA | 0 |
| HNSC | TCGA-CR-7367-01A | TCGA-CR-7367 | SLC16A9|ANK3 | SLC16A9 | ANK3 | 10 | 10 | -1 | -1 | 2 | 3 | 2 | 0.63 | 61469237 | 61815794 | tier3 | 5UTR-CDS | 16042 | NA | 0 |
| HNSC | TCGA-CV-7099-01A | TCGA-CV-7099 | SLC20A2|ANKH | SLC20A2 | ANKH | 8 | 5 | -1 | -1 | 3 | 2 | 2 | 1.1 | 42286276 | 14769300 | tier1 | In-frame | 16057 | NA | 0 |
| HNSC | TCGA-CV-5443-01A | TCGA-CV-5443 | SLC26A11|OAF | SLC26A11 | OAF | 17 | 11 | 1 | 1 | 10 | 3 | 2 | 0.26 | 78211393 | 120099577 | tier1 | In-frame | 16120 | non-validated | 0 |
| HNSC | TCGA-BA-4078-01A | TCGA-BA-4078 | SLC2A12|SGK1 | SLC2A12 | SGK1 | 6 | 6 | -1 | -1 | 33 | 26 | 19 | 0.15 | 134373516 | 134583286 | tier1 | Out-of-frame | 16128 | NA | 0 |
| HNSC | TCGA-CR-6478-01A | TCGA-CR-6478 | SLC2A8|GARNL3 | SLC2A8 | GARNL3 | 9 | 9 | 1 | 1 | 2 | 2 | 2 | 0.29 | 130162285 | 130116125 | tier4 | In-frame | 16138 | NA | 0 |
| HNSC | TCGA-CQ-A4C9-01A | TCGA-CQ-A4C9 | SLC38A1|PCTP | SLC38A1 | PCTP | 12 | 17 | -1 | 1 | 3 | 2 | 2 | 0.97 | 46662309 | 53844696 | tier1 | 5UTR-CDS | 16177 | NA | 0 |
| HNSC | TCGA-CV-7235-01A | TCGA-CV-7235 | SLC39A6|MAST2 | SLC39A6 | MAST2 | 18 | 1 | -1 | 1 | 26 | 31 | 29 | 2.6 | 33694060 | 46485268 | tier1 | Out-of-frame | 16211 | NA | 0 |
| HNSC | TCGA-CV-6441-01A | TCGA-CV-6441 | SLC3A2|POLR2G | SLC3A2 | POLR2G | 11 | 11 | 1 | 1 | 29 | 23 | 21 | 0.24 | 62639141 | 62532654 | tier1 | Out-of-frame | 16219 | NA | 0 |
| HNSC | TCGA-F7-A622-01A | TCGA-F7-A622 | SLC7A1|UBL3 | SLC7A1 | UBL3 | 13 | 13 | -1 | -1 | 2 | 5 | 4 | 0.32 | 30127898 | 30351400 | tier3 | 5UTR-CDS | 16288 | NA | 0 |
| HNSC | TCGA-H7-A76A-01A | TCGA-H7-A76A | SLCO3A1|EPHB1 | SLCO3A1 | EPHB1 | 15 | 3 | 1 | 1 | 2 | 1 | 1 | 0.24 | 92459688 | 134959990 | tier3 | Out-of-frame | 16313 | NA | 0 |
| HNSC | TCGA-F7-A623-01A | TCGA-F7-A623 | SMAP1|KHDC1 | SMAP1 | KHDC1 | 6 | 6 | 1 | -1 | 2 | 6 | 5 | 2.1 | 71508440 | 74001763 | tier2 | Out-of-frame | 16361 | NA | 0 |
| HNSC | TCGA-CV-7428-01A | TCGA-CV-7428 | SMU1|B4GALT1 | SMU1 | B4GALT1 | 9 | 9 | -1 | -1 | 3 | 7 | 3 | 1.1 | 33068822 | 33104779 | tier1 | In-frame | 16436 | NA | 0 |
| HNSC | TCGA-CN-6018-01A | TCGA-CN-6018 | SMURF1|AZGP1 | SMURF1 | AZGP1 | 7 | 7 | -1 | -1 | 20 | 6 | 6 | 0.003 | 98741349 | 99569629 | tier1 | In-frame | 16440 | NA | 0 |
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