Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| HNSC | TCGA-P3-A6T6-01A | TCGA-P3-A6T6 | RAI1|LRRC4C | RAI1 | LRRC4C | 17 | 11 | 1 | -1 | 2 | 1 | 1 | 0.091 | 17707163 | 40669828 | tier3 | CDS-5UTR | 14200 | NA | 0 |
| HNSC | TCGA-HD-7831-01A | TCGA-HD-7831 | RAP1A|CD2 | RAP1A | CD2 | 1 | 1 | 1 | 1 | 6 | 6 | 5 | 1 | 112162556 | 117297253 | tier1 | 5UTR-CDS | 14268 | NA | 0 |
| HNSC | TCGA-QK-A6VC-01A | TCGA-QK-A6VC | RAVER1|ICAM3 | RAVER1 | ICAM3 | 19 | 19 | -1 | -1 | 8 | 6 | 5 | 0.019 | 10443965 | 10449624 | tier1 | Out-of-frame | 14397 | NA | 0 |
| HNSC | TCGA-D6-6827-01A | TCGA-D6-6827 | RB1|HTR2C | RB1 | HTR2C | 13 | X | 1 | 1 | 19 | 17 | 14 | 0.23 | 48881542 | 114141152 | tier1 | Out-of-frame | 14405 | NA | 0 |
| HNSC | TCGA-CR-6473-01A | TCGA-CR-6473 | RCC1|SERINC2 | RCC1 | SERINC2 | 1 | 1 | 1 | 1 | 2 | 3 | 3 | 0.21 | 28834672 | 31905814 | tier3 | 5UTR-CDS | 14508 | NA | 0 |
| HNSC | TCGA-CV-A45R-01A | TCGA-CV-A45R | REV1|TMEM131 | REV1 | TMEM131 | 2 | 2 | -1 | -1 | 5 | 5 | 5 | 1.1 | 100106279 | 98392481 | tier1 | 5UTR-CDS | 14571 | NA | 0 |
| HNSC | TCGA-CN-4730-01A | TCGA-CN-4730 | RNASE10|CD38 | RNASE10 | CD38 | 14 | 4 | 1 | 1 | 2 | 2 | 2 | 0.95 | 20974178 | 15818134 | tier3 | Out-of-frame | 14717 | NA | 0 |
| HNSC | TCGA-CN-4731-01A | TCGA-CN-4731 | RNASE10|CD38 | RNASE10 | CD38 | 14 | 4 | 1 | 1 | 2 | 1 | 1 | 0.95 | 20974178 | 15818134 | tier2 | Out-of-frame | 14718 | NA | 0 |
| HNSC | TCGA-CN-5369-01A | TCGA-CN-5369 | RNASE10|CD38 | RNASE10 | CD38 | 14 | 4 | 1 | 1 | 2 | 1 | 1 | 0.95 | 20974178 | 15818134 | tier3 | Out-of-frame | 14719 | NA | 0 |
| HNSC | TCGA-CV-6954-01A | TCGA-CV-6954 | RNF152|PIGN | RNF152 | PIGN | 18 | 18 | -1 | -1 | 3 | 4 | 3 | 0.47 | 59560028 | 59774318 | tier1 | 5UTR-CDS | 14773 | NA | 0 |
| HNSC | TCGA-CV-A45Z-01A | TCGA-CV-A45Z | RNF217|PTPRK | RNF217 | PTPRK | 6 | 6 | 1 | -1 | 2 | 1 | 1 | 0.71 | 125284572 | 128718833 | tier3 | Out-of-frame | 14831 | NA | 0 |
| HNSC | TCGA-CV-5434-01A | TCGA-CV-5434 | ROCK1|DCC | ROCK1 | DCC | 18 | 18 | -1 | 1 | 29 | 18 | 15 | 0.65 | 18586312 | 50912413 | tier1 | In-frame | 14883 | NA | 0 |
| HNSC | TCGA-BB-4227-01A | TCGA-BB-4227 | RP11-47I22.3|PRKCH | RP11-47I22.3 | PRKCH | 14 | 14 | 1 | 1 | 10 | 7 | 6 | 0.58 | 62037478 | 61952220 | tier1 | In-frame | 14934 | NA | 0 |
| HNSC | TCGA-F7-7848-01A | TCGA-F7-7848 | RPS6KB2|PCNXL3 | RPS6KB2 | PCNXL3 | 11 | 11 | 1 | 1 | 63 | 29 | 29 | 0.003 | 67196711 | 65385411 | tier2 | Out-of-frame | 15094 | NA | 0 |
| HNSC | TCGA-BA-A8YP-01A | TCGA-BA-A8YP | RSF1|ODZ4 | RSF1 | ODZ4 | 11 | 11 | -1 | -1 | 2 | 5 | 5 | 5.8 | 77531574 | 78449615 | tier2 | Out-of-frame | 15150 | NA | 0 |
| HNSC | TCGA-CV-5978-01A | TCGA-CV-5978 | S100A2|CXCR5 | S100A2 | CXCR5 | 1 | 11 | -1 | 1 | 2 | 92 | 9 | 0.045 | 153533819 | 118754475 | tier3 | 3UTR-5UTR | 15225 | NA | 0 |
| HNSC | TCGA-CV-7183-01A | TCGA-CV-7183 | S100A8|MYO6 | S100A8 | MYO6 | 1 | 6 | -1 | 1 | 2 | 2 | 1 | 1.9 | 153362508 | 76595721 | tier4 | 3UTR-CDS | 15245 | NA | 0 |
| HNSC | TCGA-CV-7100-01A | TCGA-CV-7100 | SART1|CNTN5 | SART1 | CNTN5 | 11 | 11 | 1 | 1 | 17 | 13 | 11 | 2.6 | 65735292 | 99690275 | tier1 | Out-of-frame | 15315 | non-validated | 0 |
| HNSC | TCGA-CN-4731-01A | TCGA-CN-4731 | SCAF1|FLT3LG | SCAF1 | FLT3LG | 19 | 19 | 1 | 1 | 45 | 16 | 13 | 0.55 | 50156962 | 49982166 | tier1 | Out-of-frame | 15360 | NA | 0 |
| HNSC | TCGA-D6-A4ZB-01A | TCGA-D6-A4ZB | SCAPER|C15orf27 | SCAPER | C15orf27 | 15 | 15 | -1 | 1 | 3 | 3 | 3 | 0.14 | 76696865 | 76426509 | tier1 | CDS-5UTR | 15382 | NA | 0 |
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