Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| HNSC | TCGA-HD-7753-01A | TCGA-HD-7753 | PARD6G|RFTN2 | PARD6G | RFTN2 | 18 | 2 | -1 | -1 | 83 | 37 | 35 | 0.45 | 78005160 | 198437004 | tier1 | In-frame | 12289 | non-validated | 0.37369 |
| HNSC | TCGA-BA-A6DL-01A | TCGA-BA-A6DL | PARL|ABCC5 | PARL | ABCC5 | 3 | 3 | -1 | -1 | 10 | 8 | 8 | 0.3 | 183602510 | 183732235 | tier1 | CDS-5UTR | 12292 | NA | 0.34658 |
| HNSC | TCGA-DQ-7595-01A | TCGA-DQ-7595 | PCNXL3|ERBB3 | PCNXL3 | ERBB3 | 11 | 12 | 1 | 1 | 2 | 7 | 4 | 0.12 | 65404910 | 56492035 | tier3 | 3UTR-5UTR | 12438 | NA | 0.383 |
| HNSC | TCGA-CQ-5334-01A | TCGA-CQ-5334 | PDE7A|NRG1 | PDE7A | NRG1 | 8 | 8 | -1 | 1 | 11 | 7 | 7 | 0.41 | 66691955 | 32585467 | tier1 | In-frame | 12511 | NA | 0.37798 |
| HNSC | TCGA-BA-5555-01A | TCGA-BA-5555 | PHLDB2|CD96 | PHLDB2 | CD96 | 3 | 3 | 1 | 1 | 8 | 10 | 10 | 0.27 | 111564782 | 111366390 | tier1 | In-frame | 12755 | NA | 0.35985 |
| HNSC | TCGA-CQ-A4CE-01A | TCGA-CQ-A4CE | PKP3|KRT1 | PKP3 | KRT1 | 11 | 12 | 1 | -1 | 2 | 2 | 2 | 0.02 | 404681 | 53074191 | tier3 | NA | 12930 | NA | 0.37017 |
| HNSC | TCGA-CR-7370-01A | TCGA-CR-7370 | PLA2R1|ITGB6 | PLA2R1 | ITGB6 | 2 | 2 | -1 | -1 | 104 | 63 | 58 | 0.12 | 160832579 | 160998582 | tier1 | In-frame | 12941 | NA | 0.36712 |
| HNSC | TCGA-QK-A6V9-01A | TCGA-QK-A6V9 | PLSCR1|MACROD2 | PLSCR1 | MACROD2 | 3 | 20 | -1 | 1 | 10 | 12 | 12 | 1.4 | 146234793 | 16021846 | tier1 | Out-of-frame | 13049 | NA | 0.37073 |
| HNSC | TCGA-CQ-A4C7-01A | TCGA-CQ-A4C7 | PMEPA1|ARFGEF2 | PMEPA1 | ARFGEF2 | 20 | 20 | -1 | 1 | 2 | 20 | 10 | 1.5 | 56223454 | 47615777 | tier3 | 3UTR-CDS | 13085 | NA | 0.3627 |
| HNSC | TCGA-UF-A7JD-01A | TCGA-UF-A7JD | POGZ|SLC6A13 | POGZ | SLC6A13 | 1 | 12 | -1 | -1 | 7 | 4 | 4 | 0.042 | 151395873 | 352979 | tier1 | In-frame | 13138 | NA | 0.36339 |
| HNSC | TCGA-HD-A6HZ-01A | TCGA-HD-A6HZ | PPAP2A|SPEF2 | PPAP2A | SPEF2 | 5 | 5 | -1 | 1 | 21 | 12 | 12 | 1.2 | 54830400 | 35806809 | tier1 | Out-of-frame | 13215 | NA | 0.35548 |
| HNSC | TCGA-CV-7430-01A | TCGA-CV-7430 | PPL|UTRN | PPL | UTRN | 16 | 6 | -1 | 1 | 2 | 6 | 6 | 0.065 | 4932508 | 144665237 | tier2 | NA | 13303 | NA | 0.3723 |
| HNSC | TCGA-CN-6992-01A | TCGA-CN-6992 | PPPDE1|C1orf101 | PPPDE1 | C1orf101 | 1 | 1 | 1 | 1 | 4 | 9 | 8 | 0.14 | 244816657 | 244798791 | tier1 | Out-of-frame | 13473 | NA | 0 |
| HNSC | TCGA-MT-A7BN-01A | TCGA-MT-A7BN | PREP|PTPRK | PREP | PTPRK | 6 | 6 | -1 | -1 | 6 | 2 | 1 | 0.18 | 105729621 | 128643455 | tier2 | Out-of-frame | 13512 | NA | 0.37077 |
| HNSC | TCGA-BA-4078-01A | TCGA-BA-4078 | PTK7|ANKS1A | PTK7 | ANKS1A | 6 | 6 | 1 | 1 | 23 | 9 | 9 | 0.007 | 43044305 | 34935016 | tier1 | Out-of-frame | 13791 | NA | 0.37813 |
| HNSC | TCGA-CN-5364-01A | TCGA-CN-5364 | PTPN1|P2RX4 | PTPN1 | P2RX4 | 20 | 12 | 1 | 1 | 34 | 33 | 29 | 0.021 | 49127127 | 121654937 | tier1 | Out-of-frame | 13805 | NA | 0.38067 |
| HNSC | TCGA-CQ-6224-01A | TCGA-CQ-6224 | PTPRD|CYGB | PTPRD | CYGB | 9 | 17 | -1 | -1 | 18 | 9 | 8 | 2.4 | 9938507 | 74527224 | tier1 | 5UTR-CDS | 13849 | NA | 0.36661 |
| HNSC | TCGA-CV-7407-01A | TCGA-CV-7407 | PTPRD|IDO1 | PTPRD | IDO1 | 9 | 8 | -1 | 1 | 54 | 30 | 28 | 0.22 | 8733780 | 39771408 | tier1 | CDS-5UTR | 13850 | NA | 0.36486 |
| HNSC | TCGA-CV-5434-01A | TCGA-CV-5434 | PTPRZ1|TSPAN33 | PTPRZ1 | TSPAN33 | 7 | 7 | 1 | 1 | 58 | 40 | 32 | 0.55 | 121695141 | 128801520 | tier1 | In-frame | 13931 | NA | 0 |
| HNSC | TCGA-CR-5243-01A | TCGA-CR-5243 | RAGE|PRND | RAGE | PRND | 14 | 20 | -1 | 1 | 2 | 2 | 2 | 0.27 | 102717149 | 4705187 | tier2 | CDS-5UTR | 14195 | NA | 0 |
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