Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| HNSC | TCGA-CV-7430-01A | TCGA-CV-7430 | NCEH1|SPATA16 | NCEH1 | SPATA16 | 3 | 3 | -1 | -1 | 16 | 22 | 20 | 4.3 | 172428637 | 172674614 | tier1 | In-frame | 11153 | NA | 0.32812 |
| HNSC | TCGA-CN-4742-01A | TCGA-CN-4742 | NCKAP1|PARD3 | NCKAP1 | PARD3 | 2 | 10 | -1 | -1 | 85 | 58 | 53 | 1.1 | 183888534 | 34985347 | tier1 | In-frame | 11163 | NA | 0.37733 |
| HNSC | TCGA-CN-5359-01A | TCGA-CN-5359 | NEDD4L|CDH19 | NEDD4L | CDH19 | 18 | 18 | 1 | -1 | 15 | 9 | 8 | 1.9 | 55833093 | 64239553 | tier1 | CDS-5UTR | 11335 | NA | 0.38028 |
| HNSC | TCGA-CN-A498-01A | TCGA-CN-A498 | NOTCH1|MAPK1 | NOTCH1 | MAPK1 | 9 | 22 | -1 | -1 | 9 | 2 | 2 | 1.1 | 139405604 | 22143097 | tier1 | Out-of-frame | 11662 | NA | 0.39407 |
| HNSC | TCGA-CQ-7065-01A | TCGA-CQ-7065 | NOTCH2|SPAG17 | NOTCH2 | SPAG17 | 1 | 1 | -1 | -1 | 8 | 30 | 28 | 0.005 | 120611948 | 118524024 | tier1 | In-frame | 11667 | NA | 0.38445 |
| HNSC | TCGA-BA-6871-01A | TCGA-BA-6871 | NR4A1|IL20RB | NR4A1 | IL20RB | 12 | 3 | 1 | 1 | 9 | 10 | 10 | 0.006 | 52435713 | 136699308 | tier1 | In-frame | 11726 | NA | 0.3803 |
| HNSC | TCGA-CV-7090-01A | TCGA-CV-7090 | NRP2|PARD3B | NRP2 | PARD3B | 2 | 2 | 1 | 1 | 11 | 7 | 7 | 0.56 | 206548087 | 206418048 | tier1 | Out-of-frame | 11761 | validated | 0.37756 |
| HNSC | TCGA-P3-A6T3-01A | TCGA-P3-A6T3 | NRP2|PARD3B | NRP2 | PARD3B | 2 | 2 | 1 | 1 | 5 | 4 | 2 | 0.56 | 206562445 | 206480180 | tier1 | In-frame | 11763 | NA | 0.37756 |
| HNSC | TCGA-CR-7379-01A | TCGA-CR-7379 | NUDT3|CDH12 | NUDT3 | CDH12 | 6 | 5 | -1 | -1 | 8 | 2 | 2 | 0.7 | 34360041 | 21817241 | tier1 | Out-of-frame | 11867 | NA | 0.36252 |
| HNSC | TCGA-CV-5443-01A | TCGA-CV-5443 | OAF|SLC26A11 | OAF | SLC26A11 | 11 | 17 | 1 | 1 | 19 | 1 | 1 | 0.021 | 120097705 | 78215570 | tier3 | In-frame | 11979 | non-validated | 0.34681 |
| HNSC | TCGA-F7-A61V-01A | TCGA-F7-A61V | ODZ2|CATSPER3 | ODZ2 | CATSPER3 | 5 | 5 | 1 | 1 | 2 | 1 | 1 | 0.45 | 167303200 | 134331963 | tier2 | Out-of-frame | 12006 | NA | 0.35393 |
| HNSC | TCGA-F7-A61V-01A | TCGA-F7-A61V | ODZ2|PCBD2 | ODZ2 | PCBD2 | 5 | 5 | 1 | 1 | 4 | 3 | 3 | 0.54 | 167303200 | 134294730 | tier1 | Out-of-frame | 12007 | NA | 0.35967 |
| HNSC | TCGA-QK-A8Z9-01B | TCGA-QK-A8Z9 | ODZ3|NR3C2 | ODZ3 | NR3C2 | 4 | 4 | 1 | -1 | 2 | 2 | 2 | 2.3 | 183370236 | 149116013 | tier2 | NA | 12009 | NA | 0.37755 |
| HNSC | TCGA-CR-7383-01A | TCGA-CR-7383 | P4HB|CSDA | P4HB | CSDA | 17 | 12 | -1 | -1 | 2 | 25 | 9 | 2 | 79801042 | 10871742 | tier3 | NA | 12140 | NA | 0.37804 |
| HNSC | TCGA-BB-4223-01A | TCGA-BB-4223 | PAN3|NTRK2 | PAN3 | NTRK2 | 13 | 9 | 1 | 1 | 4 | 8 | 8 | 1.5 | 28713224 | 87549077 | tier1 | 5UTR-CDS | 12235 | NA | 0.38477 |
| HNSC | TCGA-CQ-5332-01A | TCGA-CQ-5332 | PANX1|HEPHL1 | PANX1 | HEPHL1 | 11 | 11 | 1 | 1 | 36 | 11 | 9 | 0.53 | 93862659 | 93844703 | tier1 | In-frame | 12244 | NA | 0.33535 |
| HNSC | TCGA-CV-7247-01A | TCGA-CV-7247 | PANX1|HEPHL1 | PANX1 | HEPHL1 | 11 | 11 | 1 | 1 | 11 | 4 | 4 | 0.53 | 93862659 | 93826667 | tier1 | Out-of-frame | 12245 | NA | 0.33535 |
| HNSC | TCGA-CQ-6228-01A | TCGA-CQ-6228 | PANX1|KIAA1377 | PANX1 | KIAA1377 | 11 | 11 | 1 | 1 | 89 | 55 | 54 | 0.69 | 93886796 | 101814996 | tier1 | Out-of-frame | 12246 | non-validated | 0.3599 |
| HNSC | TCGA-CR-7377-01A | TCGA-CR-7377 | PARD3|ARMC4 | PARD3 | ARMC4 | 10 | 10 | -1 | -1 | 22 | 13 | 11 | 0.22 | 35103804 | 28196706 | tier1 | Out-of-frame | 12267 | NA | 0.37944 |
| HNSC | TCGA-DQ-7591-01A | TCGA-DQ-7591 | PARD6G|CHST1 | PARD6G | CHST1 | 18 | 11 | -1 | -1 | 17 | 6 | 6 | 0.11 | 77960593 | 45674156 | tier1 | CDS-5UTR | 12288 | NA | 0.37382 |
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