Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| HNSC | TCGA-CV-6941-01A | TCGA-CV-6941 | LPP|LEPREL1 | LPP | LEPREL1 | 3 | 3 | 1 | -1 | 18 | 7 | 7 | 0.19 | 188327632 | 189713231 | tier1 | In-frame | 9464 | NA | 0.36754 |
| HNSC | TCGA-CV-7418-01A | TCGA-CV-7418 | LRP5|CLPB | LRP5 | CLPB | 11 | 11 | 1 | -1 | 19 | 55 | 53 | 0.17 | 68080273 | 72070052 | tier1 | In-frame | 9531 | NA | 0.37643 |
| HNSC | TCGA-IQ-7631-01A | TCGA-IQ-7631 | LRP5|ZNF317 | LRP5 | ZNF317 | 11 | 19 | 1 | 1 | 6 | 10 | 10 | 0.75 | 68080273 | 9266601 | tier1 | CDS-5UTR | 9539 | NA | 0.37774 |
| HNSC | TCGA-F7-A623-01A | TCGA-F7-A623 | LY6E|LY6D | LY6E | LY6D | 8 | 8 | 1 | -1 | 2 | 2 | 1 | 0.49 | 144103826 | 143868008 | tier3 | 3UTR-5UTR | 9693 | NA | 0.35544 |
| HNSC | TCGA-CN-6997-01A | TCGA-CN-6997 | LYN|NTRK3 | LYN | NTRK3 | 8 | 15 | 1 | -1 | 95 | 77 | 69 | 0.051 | 56866543 | 88576276 | tier1 | In-frame | 9696 | NA | 0.39375 |
| HNSC | TCGA-BA-6872-01A | TCGA-BA-6872 | LYPD1|NCKAP5 | LYPD1 | NCKAP5 | 2 | 2 | -1 | -1 | 6 | 5 | 5 | 0.51 | 133425973 | 133489624 | tier2 | In-frame | 9698 | validated | 0.33545 |
| HNSC | TCGA-CV-7235-01A | TCGA-CV-7235 | MACF1|AKIRIN1 | MACF1 | AKIRIN1 | 1 | 1 | 1 | 1 | 23 | 17 | 17 | 0.054 | 39571389 | 39463843 | tier1 | NA | 9724 | NA | 0.36765 |
| HNSC | TCGA-CR-5248-01A | TCGA-CR-5248 | MAGI1|DPH3 | MAGI1 | DPH3 | 3 | 3 | -1 | -1 | 3 | 4 | 4 | 0.013 | 65607647 | 16302336 | tier2 | Out-of-frame | 9766 | NA | 0.36806 |
| HNSC | TCGA-UF-A7JK-01A | TCGA-UF-A7JK | MAP4|ULK2 | MAP4 | ULK2 | 3 | 17 | -1 | -1 | 9 | 5 | 5 | 0.044 | 47956307 | 19681029 | tier1 | Out-of-frame | 9903 | NA | 0.37478 |
| HNSC | TCGA-CN-A498-01A | TCGA-CN-A498 | MAPK1|NOTCH1 | MAPK1 | NOTCH1 | 22 | 9 | -1 | -1 | 6 | 1 | 1 | 1.1 | 22153301 | 139414017 | tier2 | Out-of-frame | 9930 | NA | 0.39407 |
| HNSC | TCGA-CV-A45T-01A | TCGA-CV-A45T | MAPKAP1|DENND1A | MAPKAP1 | DENND1A | 9 | 9 | -1 | -1 | 4 | 2 | 1 | 0.18 | 128469250 | 126554909 | tier3 | 5UTR-CDS | 9958 | NA | 0.35777 |
| HNSC | TCGA-BA-7269-01A | TCGA-BA-7269 | MARK2|BPIFA2 | MARK2 | BPIFA2 | 11 | 20 | 1 | 1 | 22 | 35 | 34 | 0.19 | 63607032 | 31765953 | tier1 | Out-of-frame | 9996 | NA | 0.38315 |
| HNSC | TCGA-BA-A4II-01A | TCGA-BA-A4II | MARK2|C11orf84 | MARK2 | C11orf84 | 11 | 11 | 1 | 1 | 75 | 20 | 19 | 0.097 | 63668150 | 63594400 | tier1 | Out-of-frame | 9999 | NA | 0 |
| HNSC | TCGA-CV-6938-01A | TCGA-CV-6938 | MBD5|ACVR2A | MBD5 | ACVR2A | 2 | 2 | 1 | 1 | 3 | 3 | 1 | 0.5 | 148779253 | 148653870 | tier2 | 5UTR-CDS | 10047 | NA | 0.37762 |
| HNSC | TCGA-CN-6020-01A | TCGA-CN-6020 | MIRLET7BHG|SCUBE1 | MIRLET7BHG | SCUBE1 | 22 | 22 | 1 | -1 | 23 | 17 | 17 | 0.004 | 46499129 | 43735241 | tier1 | Out-of-frame | 10391 | NA | 0.35332 |
| HNSC | TCGA-CR-7382-01A | TCGA-CR-7382 | MMP9|UTRN | MMP9 | UTRN | 20 | 6 | 1 | 1 | 2 | 3 | 3 | 3.6 | 44645199 | 144665237 | tier3 | NA | 10551 | non-validated | 0.37559 |
| HNSC | TCGA-CN-A49A-01A | TCGA-CN-A49A | MYH9|TXN2 | MYH9 | TXN2 | 22 | 22 | -1 | -1 | 9 | 6 | 6 | 0.003 | 36783852 | 36863964 | tier1 | 5UTR-CDS | 10919 | NA | 0.37799 |
| HNSC | TCGA-DQ-7589-01A | TCGA-DQ-7589 | MYO6|SENP6 | MYO6 | SENP6 | 6 | 6 | 1 | 1 | 5 | 4 | 1 | 0.004 | 76459140 | 76419243 | tier3 | 5UTR-CDS | 11005 | NA | 0.3713 |
| HNSC | TCGA-BB-4223-01A | TCGA-BB-4223 | NAALADL2|DRD3 | NAALADL2 | DRD3 | 3 | 3 | 1 | -1 | 2 | 1 | 1 | 1 | 175455187 | 113858543 | tier2 | In-frame | 11049 | NA | 0.37113 |
| HNSC | TCGA-DQ-7591-01A | TCGA-DQ-7591 | NADK|GNB1 | NADK | GNB1 | 1 | 1 | -1 | -1 | 88 | 63 | 57 | 1.4 | 1688620 | 1720708 | tier1 | In-frame | 11065 | NA | 0.37546 |
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