Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| HNSC | TCGA-MT-A51X-01A | TCGA-MT-A51X | ITM2B|RPL30 | ITM2B | RPL30 | 13 | 8 | 1 | -1 | 2 | 23 | 4 | 0.91 | 48835524 | 99058697 | tier4 | NA | 8427 | NA | 0.36477 |
| HNSC | TCGA-CQ-A4CH-01A | TCGA-CQ-A4CH | ITSN1|CHODL | ITSN1 | CHODL | 21 | 21 | 1 | 1 | 16 | 11 | 10 | 0.44 | 35015019 | 19289537 | tier1 | 5UTR-5UTR | 8460 | NA | 0.37712 |
| HNSC | TCGA-MZ-A7D7-01A | TCGA-MZ-A7D7 | JARID2|HFE | JARID2 | HFE | 6 | 6 | 1 | 1 | 8 | 7 | 7 | 0.31 | 15452406 | 26091069 | tier1 | In-frame | 8481 | NA | 0.3696 |
| HNSC | TCGA-F7-A50J-01A | TCGA-F7-A50J | KANK1|DOCK8 | KANK1 | DOCK8 | 9 | 9 | 1 | 1 | 4 | 32 | 31 | 1.8 | 504754 | 441875 | tier1 | 5UTR-CDS | 8516 | NA | 0.3629 |
| HNSC | TCGA-BA-A8YP-01A | TCGA-BA-A8YP | KDM6A|DLL1 | KDM6A | DLL1 | X | 6 | 1 | -1 | 7 | 6 | 6 | 0.67 | 44833960 | 170595386 | tier1 | Out-of-frame | 8705 | NA | 0.36886 |
| HNSC | TCGA-HL-7533-01A | TCGA-HL-7533 | KIAA1432|PDCD1LG2 | KIAA1432 | PDCD1LG2 | 9 | 9 | 1 | 1 | 24 | 35 | 30 | 0.047 | 5629453 | 5549335 | tier1 | Out-of-frame | 8880 | NA | 0.34921 |
| HNSC | TCGA-CR-6478-01A | TCGA-CR-6478 | KIF21A|TSPAN8 | KIF21A | TSPAN8 | 12 | 12 | -1 | -1 | 31 | 24 | 23 | 0.1 | 39836729 | 71551567 | tier1 | CDS-5UTR | 8977 | NA | 0.34603 |
| HNSC | TCGA-CV-7238-01A | TCGA-CV-7238 | KLHL5|SLC16A2 | KLHL5 | SLC16A2 | 4 | X | 1 | 1 | 3 | 5 | 5 | 1.3 | 39046716 | 73740825 | tier1 | 5UTR-CDS | 9074 | NA | 0.35265 |
| HNSC | TCGA-D6-6827-01A | TCGA-D6-6827 | KPNA3|SLC7A1 | KPNA3 | SLC7A1 | 13 | 13 | -1 | -1 | 2 | 2 | 2 | 0.095 | 50285027 | 30107119 | tier2 | Out-of-frame | 9102 | NA | 0.36585 |
| HNSC | TCGA-CV-6954-01A | TCGA-CV-6954 | KRT1|ANKS1A | KRT1 | ANKS1A | 12 | 6 | -1 | 1 | 2 | 42 | 23 | 0.16 | 53068520 | 34977682 | tier3 | NA | 9118 | NA | 0.37621 |
| HNSC | TCGA-CN-4739-01A | TCGA-CN-4739 | KRT19|CLDN7 | KRT19 | CLDN7 | 17 | 17 | -1 | -1 | 2 | 3 | 2 | 0.34 | 39679869 | 7166264 | tier3 | 3UTR-5UTR | 9141 | NA | 0.36949 |
| HNSC | TCGA-CQ-6225-01A | TCGA-CQ-6225 | KRT19|CTNND1 | KRT19 | CTNND1 | 17 | 11 | -1 | 1 | 2 | 10 | 4 | 1.1 | 39679869 | 57574387 | tier2 | 3UTR-CDS | 9144 | non-validated | 0.38403 |
| HNSC | TCGA-DQ-7590-01A | TCGA-DQ-7590 | KRT5|HLA-DRA | KRT5 | HLA-DRA | 12 | 6 | -1 | 1 | 4 | 1 | 1 | 0.11 | 52908359 | 32407655 | tier3 | 3UTR-5UTR | 9153 | NA | 0.36275 |
| HNSC | TCGA-CV-A6JZ-01A | TCGA-CV-A6JZ | KRT6A|CXCR5 | KRT6A | CXCR5 | 12 | 11 | -1 | 1 | 2 | 53 | 38 | 0.1 | 52880958 | 118754475 | tier3 | 3UTR-5UTR | 9157 | NA | 0.36417 |
| HNSC | TCGA-DQ-5624-01A | TCGA-DQ-5624 | KRT6A|ERBB3 | KRT6A | ERBB3 | 12 | 12 | -1 | 1 | 2 | 3 | 2 | 0.04 | 52880958 | 56492035 | tier4 | 3UTR-5UTR | 9159 | NA | 0.38668 |
| HNSC | TCGA-P3-A5QA-01A | TCGA-P3-A5QA | L3MBTL2|MFI2 | L3MBTL2 | MFI2 | 22 | 3 | 1 | -1 | 2 | 2 | 1 | 0.46 | 41617291 | 196744161 | tier4 | Out-of-frame | 9175 | NA | 0.3594 |
| HNSC | TCGA-CQ-A4C7-01A | TCGA-CQ-A4C7 | LAMP1|CUL4A | LAMP1 | CUL4A | 13 | 13 | 1 | 1 | 75 | 30 | 2 | 1.2 | 113965182 | 113917801 | tier1 | Out-of-frame | 9216 | NA | 0.3714 |
| HNSC | TCGA-CN-5367-01A | TCGA-CN-5367 | LDLR|DNM2 | LDLR | DNM2 | 19 | 19 | 1 | 1 | 27 | 18 | 15 | 0.087 | 11240346 | 10935733 | tier1 | In-frame | 9268 | NA | 0.38409 |
| HNSC | TCGA-UF-A7JH-01A | TCGA-UF-A7JH | LEMD3|TSPAN8 | LEMD3 | TSPAN8 | 12 | 12 | 1 | -1 | 6 | 1 | 1 | 0.021 | 65564898 | 71676599 | tier2 | CDS-5UTR | 9290 | NA | 0.35864 |
| HNSC | TCGA-CV-7410-01A | TCGA-CV-7410 | LPP|CLSTN2 | LPP | CLSTN2 | 3 | 3 | 1 | 1 | 16 | 21 | 20 | 0.006 | 187943315 | 140251166 | tier1 | 5UTR-CDS | 9458 | NA | 0.36617 |
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