Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
| Showing page 109 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| HNSC | TCGA-HD-A6HZ-01A | TCGA-HD-A6HZ | GHR|GPR68 | GHR | GPR68 | 5 | 14 | 1 | -1 | 3 | 1 | 1 | 5.7 | 42566046 | 91701523 | tier3 | CDS-5UTR | 7055 | NA | 0.37675 |
| HNSC | TCGA-CN-6010-01A | TCGA-CN-6010 | GNAS|EEA1 | GNAS | EEA1 | 20 | 12 | 1 | -1 | 2 | 57 | 8 | 0.37 | 57486241 | 93229203 | tier3 | NA | 7187 | NA | 0.3825 |
| HNSC | TCGA-CV-5978-01A | TCGA-CV-5978 | GNAS|ITGAV | GNAS | ITGAV | 20 | 2 | 1 | 1 | 2 | 21 | 5 | 3.2 | 57486241 | 187540547 | tier4 | 3UTR-CDS | 7195 | NA | 0.3829 |
| HNSC | TCGA-H7-7774-01A | TCGA-H7-7774 | GNAS|SMAP2 | GNAS | SMAP2 | 20 | 1 | 1 | 1 | 2 | 54 | 21 | 1.4 | 57486241 | 40878688 | tier4 | 3UTR-CDS | 7201 | NA | 0.37205 |
| HNSC | TCGA-CQ-6224-01A | TCGA-CQ-6224 | GNAS|TSPAN7 | GNAS | TSPAN7 | 20 | X | 1 | 1 | 2 | 3 | 3 | 3.1 | 57486241 | 38505515 | tier3 | 3UTR-CDS | 7206 | NA | 0.37253 |
| HNSC | TCGA-TN-A7HJ-01A | TCGA-TN-A7HJ | GNRHR2|S100A13 | GNRHR2 | S100A13 | 1 | 1 | -1 | -1 | 9 | 8 | 8 | 0.22 | 145515189 | 153591514 | tier1 | In-frame | 7255 | NA | 0.35777 |
| HNSC | TCGA-CV-7261-01A | TCGA-CV-7261 | GOLIM4|SLC40A1 | GOLIM4 | SLC40A1 | 3 | 2 | -1 | -1 | 39 | 46 | 44 | 0.044 | 167742314 | 190440046 | tier1 | In-frame | 7279 | NA | 0.33755 |
| HNSC | TCGA-CQ-6224-01A | TCGA-CQ-6224 | GPC6|GPC5 | GPC6 | GPC5 | 13 | 13 | 1 | 1 | 9 | 4 | 4 | 3.3 | 93879869 | 93518535 | tier1 | In-frame | 7330 | NA | 0.34681 |
| HNSC | TCGA-BA-4075-01A | TCGA-BA-4075 | GRK5|PDZD8 | GRK5 | PDZD8 | 10 | 10 | 1 | -1 | 5 | 1 | 1 | 0.05 | 121156284 | 119078485 | tier2 | Out-of-frame | 7464 | NA | 0.38226 |
| HNSC | TCGA-P3-A6T5-01A | TCGA-P3-A6T5 | HEPHL1|GUCY1A2 | HEPHL1 | GUCY1A2 | 11 | 11 | 1 | -1 | 2 | 2 | 2 | 0.32 | 93797676 | 106856857 | tier2 | Out-of-frame | 7700 | NA | 0.35861 |
| HNSC | TCGA-CV-6961-01A | TCGA-CV-6961 | HLA-C|TCOF1 | HLA-C | TCOF1 | 6 | 5 | -1 | 1 | 2 | 1 | 1 | 0.007 | 31236528 | 149777917 | tier4 | 3UTR-CDS | 7832 | non-validated | 0.37138 |
| HNSC | TCGA-BB-7871-01A | TCGA-BB-7871 | HSP90B1|UTRN | HSP90B1 | UTRN | 12 | 6 | 1 | 1 | 2 | 16 | 10 | 0.03 | 104341704 | 144665237 | tier3 | NA | 7989 | NA | 0.38191 |
| HNSC | TCGA-CV-A6JU-01A | TCGA-CV-A6JU | IGSF3|C1orf137 | IGSF3 | C1orf137 | 1 | 1 | -1 | 1 | 18 | 23 | 20 | 1.2 | 117208906 | 117237381 | tier1 | Out-of-frame | 8129 | NA | 0 |
| HNSC | TCGA-CV-7406-01A | TCGA-CV-7406 | IL18R1|MCOLN2 | IL18R1 | MCOLN2 | 2 | 1 | 1 | -1 | 4 | 1 | 1 | 0.39 | 102972860 | 85406674 | tier3 | 5UTR-CDS | 8165 | NA | 0.35958 |
| HNSC | TCGA-CX-7086-01A | TCGA-CX-7086 | IL20RB|NCK1 | IL20RB | NCK1 | 3 | 3 | 1 | 1 | 12 | 19 | 16 | 2.1 | 136714398 | 136646826 | tier1 | CDS-5UTR | 8180 | non-validated | 0.37738 |
| HNSC | TCGA-BA-6871-01A | TCGA-BA-6871 | IL20RB|NR4A1 | IL20RB | NR4A1 | 3 | 12 | 1 | 1 | 3 | 3 | 3 | 0.006 | 136677043 | 52448111 | tier1 | CDS-5UTR | 8181 | NA | 0.3803 |
| HNSC | TCGA-CR-7399-01A | TCGA-CR-7399 | IL27RA|RLN3 | IL27RA | RLN3 | 19 | 19 | 1 | 1 | 10 | 5 | 5 | 0.019 | 14153601 | 14141522 | tier1 | Out-of-frame | 8187 | NA | 0.36098 |
| HNSC | TCGA-D6-A4Z9-01A | TCGA-D6-A4Z9 | ITGA6|UBE3B | ITGA6 | UBE3B | 2 | 12 | 1 | 1 | 2 | 1 | 1 | 4.2 | 173371002 | 109919442 | tier3 | 3UTR-5UTR | 8385 | NA | 0.37459 |
| HNSC | TCGA-CV-5436-01A | TCGA-CV-5436 | ITGB4|PLEKHB2 | ITGB4 | PLEKHB2 | 17 | 2 | 1 | 1 | 2 | 14 | 9 | 0.26 | 73753898 | 131876464 | tier3 | 3UTR-5UTR | 8400 | NA | 0.37893 |
| HNSC | TCGA-D6-8568-01A | TCGA-D6-8568 | ITGB6|RBMS1 | ITGB6 | RBMS1 | 2 | 2 | -1 | -1 | 2 | 5 | 4 | 0.71 | 161051880 | 161174738 | tier3 | In-frame | 8412 | NA | 0.37156 |
|
Showing page 109 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.