Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| HNSC | TCGA-BA-5555-01A | TCGA-BA-5555 | EBPL|LPAR6 | EBPL | LPAR6 | 13 | 13 | -1 | -1 | 2 | 9 | 8 | 1.3 | 50265390 | 48989946 | tier4 | CDS-5UTR | 5254 | NA | 0.3325 |
| HNSC | TCGA-CV-6941-01A | TCGA-CV-6941 | EGFR|ACADM | EGFR | ACADM | 7 | 1 | 1 | 1 | 120 | 60 | 48 | 0.26 | 55087058 | 76198329 | tier1 | In-frame | 5371 | NA | 0.39076 |
| HNSC | TCGA-BA-6872-01A | TCGA-BA-6872 | EGFR|DYM | EGFR | DYM | 7 | 18 | 1 | -1 | 10 | 5 | 5 | 0.08 | 55087058 | 46918015 | tier1 | Out-of-frame | 5372 | non-validated | 0.3888 |
| HNSC | TCGA-CR-7368-01A | TCGA-CR-7368 | EGFR|SEPT14 | EGFR | SEPT14 | 7 | 7 | 1 | -1 | 2 | 6 | 6 | 1.3 | 55087058 | 55874951 | tier3 | In-frame | 5383 | NA | 0 |
| HNSC | TCGA-CR-6488-01A | TCGA-CR-6488 | ENO1|DDX27 | ENO1 | DDX27 | 1 | 20 | -1 | 1 | 2 | 2 | 1 | 0.58 | 8921061 | 47849303 | tier4 | NA | 5586 | NA | 0.37271 |
| HNSC | TCGA-CN-4733-01A | TCGA-CN-4733 | EPB41L1|TGM3 | EPB41L1 | TGM3 | 20 | 20 | 1 | 1 | 14 | 15 | 9 | 0.23 | 34680735 | 2290303 | tier1 | 5UTR-CDS | 5646 | NA | 0.36694 |
| HNSC | TCGA-CQ-5333-01A | TCGA-CQ-5333 | EPS8L2|AGPAT2 | EPS8L2 | AGPAT2 | 11 | 9 | 1 | -1 | 319 | 271 | 251 | 0.004 | 709608 | 139569259 | tier1 | Out-of-frame | 5715 | NA | 0.36452 |
| HNSC | TCGA-UF-A7J9-01A | TCGA-UF-A7J9 | ERC1|HEBP1 | ERC1 | HEBP1 | 12 | 12 | 1 | -1 | 13 | 8 | 8 | 0.69 | 1517413 | 13142349 | tier1 | In-frame | 5746 | NA | 0.3584 |
| HNSC | TCGA-P3-A6SX-01A | TCGA-P3-A6SX | FAM129A|NRXN2 | FAM129A | NRXN2 | 1 | 11 | -1 | -1 | 3 | 2 | 2 | 1.6 | 184943434 | 64457948 | tier1 | In-frame | 6033 | NA | 0.36639 |
| HNSC | TCGA-BB-4223-01A | TCGA-BB-4223 | FAM69A|LRRC8D | FAM69A | LRRC8D | 1 | 1 | -1 | 1 | 9 | 5 | 5 | 0.008 | 93426933 | 90309197 | tier1 | CDS-5UTR | 6199 | NA | 0.34312 |
| HNSC | TCGA-CN-4722-01A | TCGA-CN-4722 | FAT1|ACSL1 | FAT1 | ACSL1 | 4 | 4 | -1 | -1 | 444 | 335 | 315 | 2.1 | 187627717 | 185724700 | tier2 | CDS-5UTR | 6267 | NA | 0.36504 |
| HNSC | TCGA-DQ-7588-01A | TCGA-DQ-7588 | FAT1|KIAA1430 | FAT1 | KIAA1430 | 4 | 4 | -1 | -1 | 498 | 380 | 348 | 0.21 | 187554838 | 186085333 | tier1 | In-frame | 6269 | NA | 0.36451 |
| HNSC | TCGA-CV-6962-01A | TCGA-CV-6962 | FCHSD2|GLOD4 | FCHSD2 | GLOD4 | 11 | 17 | -1 | -1 | 2 | 2 | 2 | 1.2 | 72712035 | 681984 | tier3 | In-frame | 6398 | NA | 0.36425 |
| HNSC | TCGA-CN-5367-01A | TCGA-CN-5367 | FCHSD2|GUCY1A2 | FCHSD2 | GUCY1A2 | 11 | 11 | -1 | -1 | 55 | 11 | 8 | 3.3 | 72851076 | 106856857 | tier1 | Out-of-frame | 6400 | NA | 0.37006 |
| HNSC | TCGA-CR-6473-01A | TCGA-CR-6473 | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 1222 | 512 | 454 | 0.12 | 1808661 | 1739325 | tier1 | In-frame | 6496 | NA | 0.38077 |
| HNSC | TCGA-CV-7100-01A | TCGA-CV-7100 | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 1499 | 859 | 792 | 0.12 | 1808661 | 1741429 | tier1 | In-frame | 6497 | non-validated | 0.38077 |
| HNSC | TCGA-CV-7177-01A | TCGA-CV-7177 | FGFR3|TPRG1 | FGFR3 | TPRG1 | 4 | 3 | 1 | 1 | 2 | 2 | 2 | 0.84 | 1795770 | 189028175 | tier3 | Out-of-frame | 6512 | NA | 0.37948 |
| HNSC | TCGA-CV-5440-01A | TCGA-CV-5440 | FHOD3|MS4A15 | FHOD3 | MS4A15 | 18 | 11 | 1 | 1 | 8 | 6 | 6 | 0.026 | 34267141 | 60531179 | tier1 | CDS-5UTR | 6533 | NA | 0.33475 |
| HNSC | TCGA-CN-4736-01A | TCGA-CN-4736 | FLT3LG|ALDH16A1 | FLT3LG | ALDH16A1 | 19 | 19 | 1 | 1 | 9 | 12 | 10 | 0.032 | 49979823 | 49961743 | tier1 | In-frame | 6575 | NA | 0.36316 |
| HNSC | TCGA-BA-7269-01A | TCGA-BA-7269 | FOXN2|PLB1 | FOXN2 | PLB1 | 2 | 2 | 1 | 1 | 55 | 63 | 54 | 1 | 48541953 | 28863793 | tier1 | 5UTR-CDS | 6670 | NA | 0.35178 |
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