Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| HNSC | TCGA-CR-6467-01A | TCGA-CR-6467 | CLDN10|TTC12 | CLDN10 | TTC12 | 13 | 11 | 1 | 1 | 2 | 4 | 4 | 0.8 | 96212717 | 113220795 | tier2 | In-frame | 3771 | non-validated | 0.3556 |
| HNSC | TCGA-CN-6020-01A | TCGA-CN-6020 | CLPTM1L|ARFGEF2 | CLPTM1L | ARFGEF2 | 5 | 20 | -1 | 1 | 2 | 6 | 6 | 0.065 | 1317983 | 47615777 | tier4 | 3UTR-CDS | 3845 | NA | 0.36408 |
| HNSC | TCGA-QK-A6VB-01A | TCGA-QK-A6VB | COBLL1|SLC38A11 | COBLL1 | SLC38A11 | 2 | 2 | -1 | -1 | 7 | 15 | 14 | 0.1 | 165697666 | 165796066 | tier1 | Out-of-frame | 3965 | NA | 0.3389 |
| HNSC | TCGA-CR-7382-01A | TCGA-CR-7382 | COL6A2|ELK3 | COL6A2 | ELK3 | 21 | 12 | 1 | 1 | 2 | 1 | 1 | 0.15 | 47552763 | 96588323 | tier3 | 3UTR-5UTR | 4044 | non-validated | 0.37629 |
| HNSC | TCGA-P3-A5QF-01A | TCGA-P3-A5QF | CPSF1|VPS28 | CPSF1 | VPS28 | 8 | 8 | -1 | -1 | 13 | 11 | 8 | 0.014 | 145624978 | 145649305 | tier1 | Out-of-frame | 4146 | NA | 0.35867 |
| HNSC | TCGA-CV-5440-01A | TCGA-CV-5440 | CSNK1D|SECTM1 | CSNK1D | SECTM1 | 17 | 17 | -1 | -1 | 5 | 1 | 1 | 0.57 | 80231182 | 80285168 | tier3 | CDS-5UTR | 4285 | NA | 0.38008 |
| HNSC | TCGA-CV-6961-01A | TCGA-CV-6961 | CUX1|THSD7A | CUX1 | THSD7A | 7 | 7 | 1 | -1 | 16 | 5 | 5 | 1.5 | 101713697 | 11676588 | tier1 | In-frame | 4453 | validated | 0.37294 |
| HNSC | TCGA-QK-A6VB-01A | TCGA-QK-A6VB | DAGLA|MS4A10 | DAGLA | MS4A10 | 11 | 11 | 1 | 1 | 4 | 1 | 1 | 0.011 | 61502474 | 60561445 | tier2 | In-frame | 4540 | NA | 0.33665 |
| HNSC | TCGA-QK-A6VB-01A | TCGA-QK-A6VB | DDB1|STX3 | DDB1 | STX3 | 11 | 11 | -1 | 1 | 46 | 42 | 35 | 1 | 61091451 | 59540684 | tier1 | In-frame | 4634 | NA | 0.36383 |
| HNSC | TCGA-CV-A45T-01A | TCGA-CV-A45T | DENND1A|ENG | DENND1A | ENG | 9 | 9 | -1 | -1 | 5 | 5 | 3 | 0.16 | 126319849 | 130581111 | tier1 | In-frame | 4693 | NA | 0.36677 |
| HNSC | TCGA-CR-7399-01A | TCGA-CR-7399 | DGCR2|ANO1 | DGCR2 | ANO1 | 22 | 11 | -1 | 1 | 79 | 52 | 40 | 0.24 | 19109641 | 69949172 | tier1 | Out-of-frame | 4733 | NA | 0.34835 |
| HNSC | TCGA-CV-7253-01A | TCGA-CV-7253 | DHCR24|PCNXL2 | DHCR24 | PCNXL2 | 1 | 1 | -1 | -1 | 219 | 268 | 241 | 0.3 | 55319710 | 233314921 | tier1 | In-frame | 4776 | NA | 0.3524 |
| HNSC | TCGA-CN-4742-01A | TCGA-CN-4742 | DHCR24|THBS1 | DHCR24 | THBS1 | 1 | 15 | -1 | 1 | 2 | 1 | 1 | 0.32 | 55315306 | 39873127 | tier3 | 3UTR-5UTR | 4781 | NA | 0.37574 |
| HNSC | TCGA-CV-7255-01A | TCGA-CV-7255 | DHCR24|THBS1 | DHCR24 | THBS1 | 1 | 15 | -1 | 1 | 2 | 2 | 2 | 0.32 | 55315306 | 39873127 | tier3 | 3UTR-5UTR | 4782 | non-validated | 0.37574 |
| HNSC | TCGA-CV-7177-01A | TCGA-CV-7177 | DIP2C|TECTA | DIP2C | TECTA | 10 | 11 | -1 | 1 | 6 | 1 | 1 | 2.1 | 518379 | 120996011 | tier2 | Out-of-frame | 4847 | NA | 0.34759 |
| HNSC | TCGA-P3-A5QA-01A | TCGA-P3-A5QA | DLG1|BDH1 | DLG1 | BDH1 | 3 | 3 | -1 | -1 | 34 | 39 | 36 | 2.2 | 197023217 | 197241287 | tier1 | In-frame | 4869 | NA | 0.37972 |
| HNSC | TCGA-BA-A6DB-01A | TCGA-BA-A6DB | DLG1|TMEM44 | DLG1 | TMEM44 | 3 | 3 | -1 | -1 | 2 | 1 | 1 | 5.4 | 197009550 | 194344424 | tier4 | Out-of-frame | 4878 | NA | 0.37449 |
| HNSC | TCGA-CV-7437-01A | TCGA-CV-7437 | DPY19L1|SDK1 | DPY19L1 | SDK1 | 7 | 7 | -1 | 1 | 12 | 13 | 10 | 0.15 | 35050080 | 3861082 | tier1 | In-frame | 5089 | NA | 0.34617 |
| HNSC | TCGA-UF-A718-01A | TCGA-UF-A718 | DYNC1H1|ERBB3 | DYNC1H1 | ERBB3 | 14 | 12 | 1 | 1 | 2 | 16 | 15 | 3 | 102517128 | 56492035 | tier3 | 3UTR-5UTR | 5203 | NA | 0.38469 |
| HNSC | TCGA-D6-A4Z9-01A | TCGA-D6-A4Z9 | DYRK1A|IFNGR2 | DYRK1A | IFNGR2 | 21 | 21 | 1 | 1 | 9 | 13 | 12 | 1.8 | 38739930 | 34793787 | tier1 | 5UTR-CDS | 5229 | NA | 0.38148 |
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