Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| HNSC | TCGA-CN-A498-01A | TCGA-CN-A498 | ARHGEF17|P2RY2 | ARHGEF17 | P2RY2 | 11 | 11 | 1 | 1 | 3 | 1 | 1 | 0.21 | 73022875 | 72945201 | tier2 | CDS-5UTR | 1304 | NA | 0.3772 |
| HNSC | TCGA-CV-6935-01A | TCGA-CV-6935 | ATAD2|ERBB4 | ATAD2 | ERBB4 | 8 | 2 | -1 | -1 | 20 | 10 | 10 | 0.016 | 124381298 | 212530202 | tier1 | Out-of-frame | 1575 | NA | 0.38594 |
| HNSC | TCGA-CV-6948-01A | TCGA-CV-6948 | ATP10D|GABRB1 | ATP10D | GABRB1 | 4 | 4 | 1 | 1 | 2 | 3 | 3 | 0.51 | 47487536 | 47033931 | tier2 | 5UTR-CDS | 1662 | NA | 0.36025 |
| HNSC | TCGA-QK-A8ZA-01A | TCGA-QK-A8ZA | ATP11A|CARKD | ATP11A | CARKD | 13 | 13 | 1 | 1 | 12 | 20 | 19 | 2.9 | 113344769 | 111274563 | tier1 | Out-of-frame | 1667 | NA | 0.34294 |
| HNSC | TCGA-CV-6937-01A | TCGA-CV-6937 | ATP11B|TFRC | ATP11B | TFRC | 3 | 3 | 1 | -1 | 22 | 11 | 9 | 0.11 | 182587119 | 195785503 | tier1 | In-frame | 1683 | NA | 0.36722 |
| HNSC | TCGA-CN-6992-01A | TCGA-CN-6992 | ATP6V1E2|GRIK1 | ATP6V1E2 | GRIK1 | 2 | 21 | -1 | -1 | 3 | 3 | 3 | 0.89 | 46762952 | 31015289 | tier1 | 5UTR-CDS | 1760 | NA | 0.3616 |
| HNSC | TCGA-CV-6937-01A | TCGA-CV-6937 | C11orf41|WARS2 | C11orf41 | WARS2 | 11 | 1 | 1 | -1 | 7 | 7 | 5 | 4.1 | 33596419 | 119619230 | tier1 | Out-of-frame | 2383 | NA | 0 |
| HNSC | TCGA-HD-8224-01A | TCGA-HD-8224 | C15orf41|RYR3 | C15orf41 | RYR3 | 15 | 15 | 1 | 1 | 3 | 1 | 1 | 0.12 | 36872162 | 34014916 | tier2 | Out-of-frame | 2474 | NA | 0 |
| HNSC | TCGA-BA-5555-01A | TCGA-BA-5555 | C19orf22|S100A9 | C19orf22 | S100A9 | 19 | 1 | -1 | 1 | 2 | 9 | 9 | 0.13 | 896503 | 153330330 | tier3 | 3UTR-5UTR | 2569 | NA | 0 |
| HNSC | TCGA-CV-5436-01A | TCGA-CV-5436 | C20orf94|SLC24A3 | C20orf94 | SLC24A3 | 20 | 20 | 1 | 1 | 10 | 6 | 5 | 0.68 | 10438879 | 19261603 | tier1 | Out-of-frame | 2653 | NA | 0 |
| HNSC | TCGA-CQ-7067-01A | TCGA-CQ-7067 | C5orf42|NPR3 | C5orf42 | NPR3 | 5 | 5 | -1 | 1 | 4 | 1 | 1 | 0.24 | 37153842 | 32774814 | tier3 | In-frame | 2735 | NA | 0 |
| HNSC | TCGA-CN-4723-01A | TCGA-CN-4723 | CACNA2D1|NAALADL2 | CACNA2D1 | NAALADL2 | 7 | 3 | -1 | 1 | 11 | 12 | 10 | 0.11 | 81964451 | 175455094 | tier1 | In-frame | 2867 | NA | 0.3443 |
| HNSC | TCGA-CV-5443-01A | TCGA-CV-5443 | CANX|IL1R2 | CANX | IL1R2 | 5 | 2 | 1 | 1 | 2 | 24 | 16 | 2.9 | 179157926 | 102638649 | tier4 | 3UTR-CDS | 2952 | non-validated | 0.36631 |
| HNSC | TCGA-CN-6024-01A | TCGA-CN-6024 | CBFA2T2|HM13 | CBFA2T2 | HM13 | 20 | 20 | 1 | 1 | 10 | 18 | 18 | 0.14 | 32078107 | 30132750 | tier1 | 5UTR-CDS | 3050 | NA | 0.36133 |
| HNSC | TCGA-CR-7388-01A | TCGA-CR-7388 | CBFB|ATP13A3 | CBFB | ATP13A3 | 16 | 3 | 1 | -1 | 9 | 2 | 2 | 0.86 | 67070658 | 194182965 | tier1 | CDS-5UTR | 3054 | NA | 0.36008 |
| HNSC | TCGA-HD-7229-01A | TCGA-HD-7229 | CD9|IQCE | CD9 | IQCE | 12 | 7 | 1 | 1 | 2 | 10 | 10 | 0.38 | 6347427 | 2641075 | tier3 | 3UTR-CDS | 3309 | NA | 0.37255 |
| HNSC | TCGA-CV-A460-01A | TCGA-CV-A460 | CDC42EP4|SDK2 | CDC42EP4 | SDK2 | 17 | 17 | -1 | -1 | 29 | 25 | 25 | 0.008 | 71308032 | 71335079 | tier1 | 5UTR-CDS | 3354 | NA | 0.3578 |
| HNSC | TCGA-BA-A4II-01A | TCGA-BA-A4II | CDKAL1|KCNMB2 | CDKAL1 | KCNMB2 | 6 | 3 | 1 | 1 | 4 | 1 | 1 | 0.085 | 20649608 | 178525131 | tier2 | CDS-5UTR | 3453 | NA | 0.33835 |
| HNSC | TCGA-CV-6941-01A | TCGA-CV-6941 | CELSR1|PACSIN2 | CELSR1 | PACSIN2 | 22 | 22 | -1 | -1 | 7 | 4 | 4 | 0.11 | 46859604 | 43308163 | tier1 | CDS-5UTR | 3511 | NA | 0.36957 |
| HNSC | TCGA-P3-A6T4-01A | TCGA-P3-A6T4 | CFLAR|NDUFB3 | CFLAR | NDUFB3 | 2 | 2 | 1 | 1 | 33 | 101 | 85 | 100 | 202005162 | 201950182 | tier1 | Out-of-frame | 3593 | NA | 0.37435 |
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