Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
| Showing page 105 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| GBM | TCGA-06-0129-01A | TCGA-06-0129 | TM7SF3|C12orf42 | TM7SF3 | C12orf42 | 12 | 12 | -1 | -1 | 2 | 3 | 2 | 0.012 | 27156169 | 103670988 | tier2 | Out-of-frame | 17868 | NA | 0 |
| GBM | TCGA-06-0238-01A | TCGA-06-0238 | TM9SF4|HM13 | TM9SF4 | HM13 | 20 | 20 | 1 | 1 | 2 | 11 | 11 | 0.074 | 30697558 | 30136832 | tier2 | Out-of-frame | 17878 | NA | 0 |
| GBM | TCGA-41-2571-01A | TCGA-41-2571 | TMEM19|TSPAN8 | TMEM19 | TSPAN8 | 12 | 12 | 1 | -1 | 4 | 7 | 5 | 0.87 | 72083484 | 71551567 | tier1 | CDS-5UTR | 18005 | NA | 0 |
| GBM | TCGA-06-5415-01A | TCGA-06-5415 | TXNDC15|ARPC2 | TXNDC15 | ARPC2 | 5 | 2 | 1 | 1 | 22 | 77 | 66 | 0.72 | 134210220 | 219103387 | tier1 | In-frame | 18984 | non-validated | 0 |
| GBM | TCGA-06-5856-01A | TCGA-06-5856 | VASN|RBFOX1 | VASN | RBFOX1 | 16 | 16 | 1 | 1 | 6 | 22 | 17 | 0.41 | 4421994 | 7759058 | tier1 | 5UTR-CDS | 19510 | NA | 0 |
| GBM | TCGA-32-1970-01A | TCGA-32-1970 | ZNF610|RALA | ZNF610 | RALA | 19 | 7 | 1 | 1 | 8 | 44 | 35 | 0.81 | 52839759 | 39745722 | tier1 | 5UTR-CDS | 20588 | non-validated | 0 |
| HNSC | TCGA-CR-6482-01A | TCGA-CR-6482 | ABCB9|MPHOSPH9 | ABCB9 | MPHOSPH9 | 12 | 12 | -1 | -1 | 3 | 3 | 3 | 1.3 | 123450834 | 123651336 | tier1 | 5UTR-CDS | 53 | non-validated | 0.34899 |
| HNSC | TCGA-CR-6467-01A | TCGA-CR-6467 | ABCC4|ABCB4 | ABCC4 | ABCB4 | 13 | 7 | -1 | -1 | 42 | 28 | 26 | 0.84 | 95829961 | 87038708 | tier1 | In-frame | 63 | validated | 0.35507 |
| HNSC | TCGA-BB-A5HY-01A | TCGA-BB-A5HY | AC005522.1|ZP3 | AC005522.1 | ZP3 | 7 | 7 | 1 | 1 | 30 | 183 | 149 | 0.004 | 76093026 | 76054369 | tier1 | 5UTR-5UTR | 142 | NA | 0.34308 |
| HNSC | TCGA-BA-6872-01A | TCGA-BA-6872 | AC008745.1|EHD2 | AC008745.1 | EHD2 | 19 | 19 | 1 | 1 | 65 | 33 | 28 | 0.032 | 48282071 | 48244138 | tier4 | Out-of-frame | 153 | non-validated | 0.35965 |
| HNSC | TCGA-CV-6953-01A | TCGA-CV-6953 | AC008745.1|EHD2 | AC008745.1 | EHD2 | 19 | 19 | 1 | 1 | 19 | 8 | 7 | 0.032 | 48282071 | 48219815 | tier1 | CDS-5UTR | 154 | NA | 0.35965 |
| HNSC | TCGA-CR-7397-01A | TCGA-CR-7397 | ADAM23|PPAP2A | ADAM23 | PPAP2A | 2 | 5 | 1 | -1 | 2 | 3 | 3 | 1.3 | 207432046 | 54721162 | tier3 | In-frame | 416 | NA | 0.35997 |
| HNSC | TCGA-CV-5978-01A | TCGA-CV-5978 | ADD1|ADK | ADD1 | ADK | 4 | 10 | 1 | 1 | 16 | 13 | 10 | 0.35 | 2845751 | 76153899 | tier2 | 5UTR-CDS | 492 | NA | 0.36917 |
| HNSC | TCGA-CV-6940-01A | TCGA-CV-6940 | ADH7|CXCR5 | ADH7 | CXCR5 | 4 | 11 | -1 | 1 | 2 | 3 | 2 | 0.033 | 100333418 | 118754475 | tier3 | 3UTR-5UTR | 500 | NA | 0.35618 |
| HNSC | TCGA-CV-7446-01A | TCGA-CV-7446 | AGPAT5|KCNU1 | AGPAT5 | KCNU1 | 8 | 8 | 1 | 1 | 2 | 3 | 3 | 1.7 | 6599272 | 36721922 | tier3 | In-frame | 659 | NA | 0.33697 |
| HNSC | TCGA-CR-6474-01A | TCGA-CR-6474 | AHNAK|SUPT16H | AHNAK | SUPT16H | 11 | 14 | -1 | -1 | 2 | 9 | 7 | 0.26 | 62283375 | 21829491 | tier4 | 3UTR-CDS | 695 | NA | 0.37571 |
| HNSC | TCGA-DQ-5624-01A | TCGA-DQ-5624 | ALG10B|IGFBP6 | ALG10B | IGFBP6 | 12 | 12 | 1 | 1 | 17 | 23 | 23 | 0.45 | 38712260 | 53495829 | tier1 | In-frame | 827 | NA | 0.35578 |
| HNSC | TCGA-MT-A51X-01A | TCGA-MT-A51X | ANXA1|TLN1 | ANXA1 | TLN1 | 9 | 9 | 1 | -1 | 2 | 1 | 1 | 0.69 | 75785309 | 35720506 | tier3 | 3UTR-CDS | 1043 | NA | 0.38269 |
| HNSC | TCGA-CR-7374-01A | TCGA-CR-7374 | AP2M1|TYK2 | AP2M1 | TYK2 | 3 | 19 | 1 | -1 | 2 | 16 | 15 | 0.008 | 183901878 | 10491352 | tier3 | 3UTR-5UTR | 1085 | NA | 0.37881 |
| HNSC | TCGA-BA-5555-01A | TCGA-BA-5555 | ARHGDIA|ERBB3 | ARHGDIA | ERBB3 | 17 | 12 | -1 | 1 | 2 | 14 | 11 | 1.5 | 79825598 | 56492035 | tier3 | 3UTR-5UTR | 1269 | NA | 0.38424 |
|
Showing page 105 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.