Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
| Showing page 104 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| GBM | TCGA-27-1830-01A | TCGA-27-1830 | PSMD1|DNER | PSMD1 | DNER | 2 | 2 | 1 | -1 | 8 | 13 | 12 | 0.009 | 231945028 | 230377652 | tier1 | In-frame | 13721 | NA | 0.35947 |
| GBM | TCGA-06-5417-01A | TCGA-06-5417 | PTPRZ1|MET | PTPRZ1 | MET | 7 | 7 | 1 | 1 | 2 | 2 | 2 | 0.16 | 121513611 | 116339125 | tier4 | CDS-5UTR | 13928 | NA | 0 |
| GBM | TCGA-06-0686-01A | TCGA-06-0686 | RAP1B|CPM | RAP1B | CPM | 12 | 12 | 1 | -1 | 16 | 97 | 83 | 0.041 | 69004823 | 69326620 | tier2 | 5UTR-5UTR | 14269 | non-validated | 0 |
| GBM | TCGA-27-1835-01A | TCGA-27-1835 | RHOJ|C6orf52 | RHOJ | C6orf52 | 14 | 6 | 1 | -1 | 13 | 3 | 3 | 100 | 63671765 | 10671831 | tier1 | In-frame | 14658 | NA | 0 |
| GBM | TCGA-06-0750-01A | TCGA-06-0750 | RP11-15K19.2|LANCL2 | RP11-15K19.2 | LANCL2 | 7 | 7 | 1 | 1 | 4 | 22 | 20 | 0.006 | 55974072 | 55459486 | tier1 | 5UTR-CDS | 14921 | NA | 0 |
| GBM | TCGA-27-1835-01A | TCGA-27-1835 | RP4-761I2.2|TTLL5 | RP4-761I2.2 | TTLL5 | 6 | 14 | 1 | 1 | 4 | 19 | 16 | 0.22 | 11094622 | 76184204 | tier1 | Out-of-frame | 14963 | NA | 0 |
| GBM | TCGA-12-5295-01A | TCGA-12-5295 | SDC4|SPCS1 | SDC4 | SPCS1 | 20 | 3 | -1 | 1 | 55 | 168 | 141 | 1.4 | 43976965 | 52740660 | tier1 | In-frame | 15470 | NA | 0 |
| GBM | TCGA-06-0211-02A | TCGA-06-0211 | SHB|LINGO2 | SHB | LINGO2 | 9 | 9 | -1 | -1 | 3 | 6 | 4 | 1.1 | 38016008 | 27950704 | tier1 | CDS-5UTR | 15871 | non-validated | 0 |
| GBM | TCGA-06-0125-02A | TCGA-06-0125 | SIAE|HYLS1 | SIAE | HYLS1 | 11 | 11 | -1 | 1 | 3 | 2 | 1 | 0.12 | 124539256 | 125769239 | tier4 | CDS-5UTR | 15906 | non-validated | 0 |
| GBM | TCGA-06-0129-01A | TCGA-06-0129 | SLC11A2|PFKM | SLC11A2 | PFKM | 12 | 12 | -1 | 1 | 7 | 15 | 14 | 5.7 | 51386593 | 48516550 | tier1 | Out-of-frame | 16009 | NA | 0 |
| GBM | TCGA-26-5135-01A | TCGA-26-5135 | SLC16A7|RP11-362K2.2 | SLC16A7 | RP11-362K2.2 | 12 | 12 | 1 | 1 | 24 | 131 | 110 | 0.23 | 59990017 | 59206196 | tier1 | 5UTR-CDS | 16038 | non-validated | 0 |
| GBM | TCGA-06-0129-01A | TCGA-06-0129 | SLC22A23|TNFRSF21 | SLC22A23 | TNFRSF21 | 6 | 6 | -1 | -1 | 13 | 23 | 22 | 0.24 | 3410422 | 47221257 | tier1 | In-frame | 16073 | NA | 0 |
| GBM | TCGA-06-0129-01A | TCGA-06-0129 | SLC2A13|RP11-478C19.2 | SLC2A13 | RP11-478C19.2 | 12 | 12 | -1 | -1 | 5 | 12 | 11 | 0.067 | 40345059 | 110834257 | tier1 | CDS-5UTR | 16134 | NA | 0 |
| GBM | TCGA-06-1804-01A | TCGA-06-1804 | SLC39A9|BCL2L13 | SLC39A9 | BCL2L13 | 14 | 22 | 1 | 1 | 3 | 11 | 10 | 2 | 69908983 | 18138428 | tier1 | CDS-5UTR | 16212 | NA | 0 |
| GBM | TCGA-28-1747-01C | TCGA-28-1747 | SP4|GPNMB | SP4 | GPNMB | 7 | 7 | 1 | 1 | 63 | 4 | 4 | 0.62 | 21468410 | 23313140 | tier1 | Out-of-frame | 16644 | NA | 0 |
| GBM | TCGA-28-2499-01A | TCGA-28-2499 | SRRT|ZAN | SRRT | ZAN | 7 | 7 | 1 | 1 | 3 | 9 | 7 | 0.92 | 100473333 | 100377068 | tier1 | In-frame | 16891 | NA | 0 |
| GBM | TCGA-06-2569-01A | TCGA-06-2569 | SSR1|DMD | SSR1 | DMD | 6 | X | -1 | -1 | 10 | 52 | 49 | 0.11 | 7310150 | 32328393 | tier1 | In-frame | 16919 | NA | 0 |
| GBM | TCGA-06-0184-01A | TCGA-06-0184 | ST7|CAV1 | ST7 | CAV1 | 7 | 7 | 1 | 1 | 45 | 183 | 154 | 0.97 | 116593745 | 116199000 | tier1 | Out-of-frame | 16959 | NA | 0 |
| GBM | TCGA-06-0648-01A | TCGA-06-0648 | STAMBPL1|ATAD1 | STAMBPL1 | ATAD1 | 10 | 10 | 1 | -1 | 6 | 14 | 13 | 0.69 | 90661495 | 89516679 | tier2 | In-frame | 16997 | validated | 0 |
| GBM | TCGA-19-2624-01A | TCGA-19-2624 | TBC1D30|PPM1H | TBC1D30 | PPM1H | 12 | 12 | 1 | -1 | 2 | 10 | 9 | 1.5 | 65232631 | 63226059 | tier2 | In-frame | 17494 | non-validated | 0 |
|
Showing page 104 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.