Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| GBM | TCGA-06-5859-01A | TCGA-06-5859 | MAP3K13|CD37 | MAP3K13 | CD37 | 3 | 19 | 1 | 1 | 5 | 31 | 27 | 0.56 | 185003431 | 49840166 | tier1 | 5UTR-CDS | 9855 | NA | 0.36887 |
| GBM | TCGA-06-0129-01A | TCGA-06-0129 | MDGA1|PTK7 | MDGA1 | PTK7 | 6 | 6 | -1 | 1 | 5 | 19 | 17 | 0.039 | 37623476 | 43126555 | tier1 | In-frame | 10110 | NA | 0.36167 |
| GBM | TCGA-19-2624-01A | TCGA-19-2624 | MDM2|EGFR | MDM2 | EGFR | 12 | 7 | 1 | 1 | 27 | 53 | 43 | 0.061 | 69203072 | 55231426 | tier1 | Out-of-frame | 10123 | non-validated | 0.39477 |
| GBM | TCGA-12-0619-01A | TCGA-12-0619 | MED4|HTR2A | MED4 | HTR2A | 13 | 13 | -1 | -1 | 3 | 3 | 2 | 3.1 | 48653980 | 47409774 | tier1 | In-frame | 10229 | NA | 0.37716 |
| GBM | TCGA-27-2524-01A | TCGA-27-2524 | MEF2D|ZDHHC5 | MEF2D | ZDHHC5 | 1 | 11 | -1 | 1 | 3 | 8 | 7 | 0.023 | 156438572 | 57449894 | tier1 | In-frame | 10240 | NA | 0.37612 |
| GBM | TCGA-06-2561-01A | TCGA-06-2561 | MFSD6|CALCRL | MFSD6 | CALCRL | 2 | 2 | 1 | -1 | 2 | 4 | 4 | 0.26 | 191302287 | 188228229 | tier3 | In-frame | 10295 | NA | 0.35622 |
| GBM | TCGA-32-5222-01A | TCGA-32-5222 | MLLT3|IZUMO3 | MLLT3 | IZUMO3 | 9 | 9 | -1 | -1 | 4 | 8 | 4 | 0.65 | 20620653 | 24545059 | tier1 | In-frame | 10516 | NA | 0.35737 |
| GBM | TCGA-06-0129-01A | TCGA-06-0129 | MPHOSPH9|C6orf89 | MPHOSPH9 | C6orf89 | 12 | 6 | -1 | 1 | 28 | 90 | 79 | 1.8 | 123678933 | 36846784 | tier1 | CDS-5UTR | 10597 | NA | 0 |
| GBM | TCGA-27-2524-01A | TCGA-27-2524 | MRC2|RND2 | MRC2 | RND2 | 17 | 17 | 1 | 1 | 2 | 64 | 55 | 0.021 | 60705281 | 41177977 | tier4 | Out-of-frame | 10638 | NA | 0.37348 |
| GBM | TCGA-06-0129-01A | TCGA-06-0129 | NAA15|LPAR1 | NAA15 | LPAR1 | 4 | 9 | 1 | -1 | 16 | 37 | 33 | 0.23 | 140222985 | 113638002 | tier1 | Out-of-frame | 11036 | NA | 0.35477 |
| GBM | TCGA-28-2513-01A | TCGA-28-2513 | NBPF3|EPHB2 | NBPF3 | EPHB2 | 1 | 1 | 1 | 1 | 5 | 14 | 12 | 0.21 | 21771712 | 23189530 | tier1 | 5UTR-CDS | 11133 | NA | 0.38357 |
| GBM | TCGA-41-5651-01A | TCGA-41-5651 | NEGR1|ZRANB2 | NEGR1 | ZRANB2 | 1 | 1 | -1 | -1 | 2 | 6 | 4 | 0.015 | 72748002 | 71544391 | tier3 | In-frame | 11348 | validated | 0.3663 |
| GBM | TCGA-27-1834-01A | TCGA-27-1834 | NFASC|LRRN2 | NFASC | LRRN2 | 1 | 1 | 1 | -1 | 4 | 19 | 18 | 0.013 | 204797910 | 204589346 | tier1 | 5UTR-5UTR | 11426 | NA | 0.36551 |
| GBM | TCGA-06-5411-01A | TCGA-06-5411 | NFASC|NTRK1 | NFASC | NTRK1 | 1 | 1 | 1 | 1 | 168 | 779 | 647 | 0.29 | 204951148 | 156844363 | tier1 | In-frame | 11427 | non-validated | 0.38859 |
| GBM | TCGA-06-0210-01A | TCGA-06-0210 | NFASC|PRELP | NFASC | PRELP | 1 | 1 | 1 | 1 | 21 | 92 | 71 | 0.63 | 204797910 | 203452297 | tier1 | 5UTR-5UTR | 11429 | non-validated | 0.36692 |
| GBM | TCGA-12-1597-01B | TCGA-12-1597 | NFASC|RTN3 | NFASC | RTN3 | 1 | 11 | 1 | 1 | 29 | 69 | 54 | 0.54 | 204951148 | 63525628 | tier1 | Out-of-frame | 11432 | NA | 0.37333 |
| GBM | TCGA-06-0157-01A | TCGA-06-0157 | NFASC|SOX13 | NFASC | SOX13 | 1 | 1 | 1 | 1 | 10 | 48 | 44 | 0.39 | 204797910 | 204082043 | tier1 | 5UTR-5UTR | 11433 | non-validated | 0.36639 |
| GBM | TCGA-26-5132-01A | TCGA-26-5132 | PATL1|TECTA | PATL1 | TECTA | 11 | 11 | -1 | 1 | 23 | 117 | 101 | 3.8 | 59434326 | 121058541 | tier1 | Out-of-frame | 12316 | validated | 0.34856 |
| GBM | TCGA-06-0129-01A | TCGA-06-0129 | PCDHGC3|QKI | PCDHGC3 | QKI | 5 | 6 | 1 | 1 | 21 | 91 | 79 | 0.46 | 140858113 | 163956014 | tier1 | In-frame | 12391 | NA | 0.35922 |
| GBM | TCGA-26-5132-01A | TCGA-26-5132 | PDZRN4|CPM | PDZRN4 | CPM | 12 | 12 | 1 | -1 | 4 | 8 | 8 | 2.8 | 41949562 | 69326620 | tier1 | CDS-5UTR | 12593 | validated | 0.35175 |
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