Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| GBM | TCGA-14-1402-02A | TCGA-14-1402 | FCGRT|BCAT2 | FCGRT | BCAT2 | 19 | 19 | 1 | -1 | 6 | 9 | 9 | 0.48 | 50017743 | 49303554 | tier1 | Out-of-frame | 6382 | non-validated | 0.35398 |
| GBM | TCGA-06-2567-01A | TCGA-06-2567 | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 2 | 3 | 3 | 0.12 | 1808661 | 1741429 | tier4 | In-frame | 6476 | NA | 0.38077 |
| GBM | TCGA-14-0789-01A | TCGA-14-0789 | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 4 | 5 | 5 | 0.12 | 1808661 | 1741429 | tier1 | In-frame | 6477 | NA | 0.38077 |
| GBM | TCGA-14-1823-01A | TCGA-14-1823 | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 3 | 2 | 2 | 0.12 | 1808661 | 1741429 | tier1 | In-frame | 6478 | non-validated | 0.38077 |
| GBM | TCGA-14-1829-01A | TCGA-14-1829 | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 3 | 4 | 3 | 0.12 | 1808661 | 1741429 | tier1 | In-frame | 6479 | NA | 0.38077 |
| GBM | TCGA-27-1835-01A | TCGA-27-1835 | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 3525 | 19783 | 17411 | 0.12 | 1808661 | 1741429 | tier1 | In-frame | 6481 | NA | 0.38077 |
| GBM | TCGA-76-4925-01A | TCGA-76-4925 | FGFR3|TACC3 | FGFR3 | TACC3 | 4 | 4 | 1 | 1 | 243 | 485 | 389 | 0.12 | 1808661 | 1739325 | tier1 | In-frame | 6487 | NA | 0.38077 |
| GBM | TCGA-14-1034-01A | TCGA-14-1034 | FKBP8|SLC1A6 | FKBP8 | SLC1A6 | 19 | 19 | -1 | -1 | 57 | 146 | 132 | 0.39 | 18644080 | 15061202 | tier1 | Out-of-frame | 6556 | non-validated | 0.37847 |
| GBM | TCGA-06-0238-01A | TCGA-06-0238 | FOXM1|SLC2A14 | FOXM1 | SLC2A14 | 12 | 12 | -1 | -1 | 2 | 1 | 1 | 0.51 | 2977729 | 7970630 | tier3 | In-frame | 6669 | NA | 0.36975 |
| GBM | TCGA-41-2571-01A | TCGA-41-2571 | FRS2|DTX3 | FRS2 | DTX3 | 12 | 12 | 1 | 1 | 707 | 1897 | 1579 | 0.78 | 69864310 | 58002303 | tier1 | 5UTR-CDS | 6751 | NA | 0.38094 |
| GBM | TCGA-06-0129-01A | TCGA-06-0129 | FRS2|KIF5A | FRS2 | KIF5A | 12 | 12 | 1 | 1 | 12 | 35 | 29 | 0.41 | 69864310 | 57957222 | tier1 | 5UTR-CDS | 6757 | NA | 0.3817 |
| GBM | TCGA-06-0138-01A | TCGA-06-0138 | FRS2|MSRB3 | FRS2 | MSRB3 | 12 | 12 | 1 | 1 | 307 | 3064 | 2346 | 0.002 | 69864310 | 65881784 | tier1 | NA | 6766 | NA | 0.37721 |
| GBM | TCGA-19-2619-01A | TCGA-19-2619 | GATAD2B|TNFSF18 | GATAD2B | TNFSF18 | 1 | 1 | -1 | -1 | 3 | 6 | 5 | 0.53 | 153895209 | 173013109 | tier1 | 5UTR-CDS | 6993 | NA | 0.36831 |
| GBM | TCGA-27-2519-01A | TCGA-27-2519 | HDAC1|SERINC2 | HDAC1 | SERINC2 | 1 | 1 | 1 | 1 | 3 | 2 | 1 | 2 | 32768334 | 31883232 | tier2 | In-frame | 7615 | NA | 0.368 |
| GBM | TCGA-02-0033-01A | TCGA-02-0033 | KIAA0586|MPP5 | KIAA0586 | MPP5 | 14 | 14 | 1 | 1 | 2 | 3 | 3 | 0.3 | 58910893 | 67799497 | tier2 | In-frame | 8800 | NA | 0.36092 |
| GBM | TCGA-06-0129-01A | TCGA-06-0129 | KIAA1033|LGR5 | KIAA1033 | LGR5 | 12 | 12 | 1 | 1 | 7 | 15 | 13 | 0.078 | 105538650 | 71928895 | tier1 | Out-of-frame | 8818 | NA | 0.34871 |
| GBM | TCGA-06-0211-01B | TCGA-06-0211 | LANCL2|SEPT14 | LANCL2 | SEPT14 | 7 | 7 | 1 | -1 | 119 | 1987 | 1716 | 0.014 | 55479782 | 55886916 | tier1 | In-frame | 9218 | non-validated | 0 |
| GBM | TCGA-28-2513-01A | TCGA-28-2513 | LANCL2|SEPT14 | LANCL2 | SEPT14 | 7 | 7 | 1 | -1 | 11 | 28 | 25 | 0.014 | 55433922 | 55914330 | tier1 | In-frame | 9219 | NA | 0 |
| GBM | TCGA-06-0686-01A | TCGA-06-0686 | LRP1|XPO5 | LRP1 | XPO5 | 12 | 6 | 1 | -1 | 3 | 9 | 8 | 0.82 | 57539273 | 43530083 | tier1 | Out-of-frame | 9511 | validated | 0.37957 |
| GBM | TCGA-06-2561-01A | TCGA-06-2561 | LRP5|ATG16L2 | LRP5 | ATG16L2 | 11 | 11 | 1 | 1 | 2 | 8 | 8 | 0.41 | 68207384 | 72539404 | tier2 | Out-of-frame | 9528 | NA | 0.37268 |
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