Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| GBM | TCGA-06-5411-01A | TCGA-06-5411 | ATP2B4|NFASC | ATP2B4 | NFASC | 1 | 1 | 1 | 1 | 3 | 16 | 7 | 0.28 | 203596347 | 204889760 | tier1 | 5UTR-5UTR | 1724 | non-validated | 0.37841 |
| GBM | TCGA-14-0787-01A | TCGA-14-0787 | ATP6V0A1|MB | ATP6V0A1 | MB | 17 | 22 | 1 | -1 | 10 | 15 | 12 | 0.014 | 40622236 | 36033255 | tier1 | NA | 1746 | NA | 0.34355 |
| GBM | TCGA-16-1045-01B | TCGA-16-1045 | BAI2|HS3ST4 | BAI2 | HS3ST4 | 1 | 16 | -1 | 1 | 16 | 21 | 18 | 0.18 | 32221600 | 26146933 | tier1 | Out-of-frame | 1912 | NA | 0.36741 |
| GBM | TCGA-06-0157-01A | TCGA-06-0157 | C12orf5|TSPAN9 | C12orf5 | TSPAN9 | 12 | 12 | 1 | 1 | 5 | 117 | 93 | 0.73 | 4430469 | 3310343 | tier1 | CDS-5UTR | 2428 | validated | 0 |
| GBM | TCGA-06-5418-01A | TCGA-06-5418 | C6orf204|ROS1 | C6orf204 | ROS1 | 6 | 6 | -1 | -1 | 5 | 8 | 6 | 0.58 | 118802942 | 117641193 | tier1 | In-frame | 2765 | NA | 0 |
| GBM | TCGA-06-0129-01A | TCGA-06-0129 | CCND3|C6orf89 | CCND3 | C6orf89 | 6 | 6 | -1 | 1 | 2 | 10 | 9 | 0.76 | 42016239 | 36846784 | tier2 | 5UTR-5UTR | 3210 | NA | 0 |
| GBM | TCGA-19-0957-02A | TCGA-19-0957 | CHIC2|LPHN3 | CHIC2 | LPHN3 | 4 | 4 | -1 | 1 | 10 | 55 | 49 | 0.023 | 54880004 | 62248842 | tier1 | CDS-5UTR | 3678 | NA | 0.36228 |
| GBM | TCGA-27-1835-01A | TCGA-27-1835 | CLIC4|PLOD1 | CLIC4 | PLOD1 | 1 | 1 | 1 | 1 | 3 | 2 | 1 | 1.6 | 25140710 | 12008033 | tier2 | Out-of-frame | 3791 | NA | 0.36309 |
| GBM | TCGA-27-2528-01A | TCGA-27-2528 | CREB5|KCNH2 | CREB5 | KCNH2 | 7 | 7 | 1 | -1 | 26 | 48 | 42 | 1.4 | 28610155 | 150646137 | tier1 | Out-of-frame | 4197 | non-validated | 0.37964 |
| GBM | TCGA-28-2514-01A | TCGA-28-2514 | CSMD2|TMEM222 | CSMD2 | TMEM222 | 1 | 1 | -1 | 1 | 2 | 14 | 7 | 0.064 | 34312485 | 27657211 | tier4 | Out-of-frame | 4274 | NA | 0.35137 |
| GBM | TCGA-16-0846-01A | TCGA-16-0846 | CTDSP2|TSPAN31 | CTDSP2 | TSPAN31 | 12 | 12 | -1 | 1 | 5 | 29 | 25 | 0.59 | 58240155 | 58140372 | tier1 | Out-of-frame | 4330 | NA | 0.34678 |
| GBM | TCGA-06-0747-01A | TCGA-06-0747 | EBF4|TMC2 | EBF4 | TMC2 | 20 | 20 | 1 | 1 | 2 | 14 | 12 | 0.094 | 2674428 | 2621780 | tier4 | Out-of-frame | 5252 | NA | 0.34708 |
| GBM | TCGA-06-0744-01A | TCGA-06-0744 | EGFR|ERP44 | EGFR | ERP44 | 7 | 9 | 1 | -1 | 11 | 34 | 32 | 0.49 | 55087058 | 102784508 | tier1 | In-frame | 5373 | non-validated | 0.3879 |
| GBM | TCGA-19-2624-01A | TCGA-19-2624 | EGFR|GNS | EGFR | GNS | 7 | 12 | 1 | -1 | 24 | 47 | 37 | 0.51 | 55240817 | 65110599 | tier1 | Out-of-frame | 5374 | non-validated | 0.38887 |
| GBM | TCGA-19-2624-01A | TCGA-19-2624 | EGFR|PPM1H | EGFR | PPM1H | 7 | 12 | 1 | -1 | 32 | 135 | 99 | 0.047 | 55087058 | 63195940 | tier1 | Out-of-frame | 5377 | non-validated | 0.3894 |
| GBM | TCGA-06-0750-01A | TCGA-06-0750 | EGFR|SEPT14 | EGFR | SEPT14 | 7 | 7 | 1 | -1 | 6 | 229 | 196 | 1.3 | 55268106 | 55863785 | tier1 | In-frame | 5378 | NA | 0 |
| GBM | TCGA-27-1837-01A | TCGA-27-1837 | EGFR|SEPT14 | EGFR | SEPT14 | 7 | 7 | 1 | -1 | 22 | 490 | 434 | 1.3 | 55268106 | 55863785 | tier1 | In-frame | 5379 | NA | 0 |
| GBM | TCGA-28-1747-01C | TCGA-28-1747 | EGFR|SEPT14 | EGFR | SEPT14 | 7 | 7 | 1 | -1 | 13 | 108 | 94 | 1.3 | 55268106 | 55863785 | tier1 | In-frame | 5380 | NA | 0 |
| GBM | TCGA-28-2513-01A | TCGA-28-2513 | EGFR|SEPT14 | EGFR | SEPT14 | 7 | 7 | 1 | -1 | 34 | 992 | 844 | 1.3 | 55268106 | 55863785 | tier1 | In-frame | 5381 | NA | 0 |
| GBM | TCGA-32-5222-01A | TCGA-32-5222 | EGFR|SEPT14 | EGFR | SEPT14 | 7 | 7 | 1 | -1 | 17 | 840 | 587 | 1.3 | 55268106 | 55863785 | tier1 | In-frame | 5382 | NA | 0 |
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