Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| ESCA | TCGA-2H-A9GN-01A | TCGA-2H-A9GN | SMARCA4|DNM2 | SMARCA4 | DNM2 | 19 | 19 | 1 | 1 | 14 | 89 | 77 | 0.096 | 11071850 | 10916592 | tier1 | 5UTR-CDS | 16371 | NA | 0 |
| ESCA | TCGA-JY-A6FH-01A | TCGA-JY-A6FH | SMARCA4|SLC44A2 | SMARCA4 | SLC44A2 | 19 | 19 | 1 | 1 | 4 | 26 | 24 | 0.017 | 11107220 | 10745432 | tier1 | Out-of-frame | 16379 | NA | 0 |
| ESCA | TCGA-L5-A4OS-01A | TCGA-L5-A4OS | SMURF1|CFLAR | SMURF1 | CFLAR | 7 | 2 | -1 | 1 | 11 | 33 | 33 | 0.9 | 98741349 | 201994452 | tier1 | CDS-5UTR | 16442 | NA | 0 |
| ESCA | TCGA-LN-A7HV-01A | TCGA-LN-A7HV | ST3GAL3|PTPRF | ST3GAL3 | PTPRF | 1 | 1 | 1 | 1 | 3 | 32 | 28 | 2.4 | 44280605 | 44069087 | tier1 | Out-of-frame | 16935 | NA | 0 |
| ESCA | TCGA-LN-A5U6-01A | TCGA-LN-A5U6 | SYNE2|GEMIN2 | SYNE2 | GEMIN2 | 14 | 14 | 1 | 1 | 5 | 24 | 18 | 0.32 | 64319861 | 39584033 | tier1 | 5UTR-CDS | 17246 | NA | 0 |
| ESCA | TCGA-L5-A8NF-01A | TCGA-L5-A8NF | TBC1D15|PTPRR | TBC1D15 | PTPRR | 12 | 12 | 1 | -1 | 3 | 25 | 22 | 2.5 | 72266783 | 71286757 | tier1 | Out-of-frame | 17455 | NA | 0 |
| ESCA | TCGA-L5-A4OQ-01A | TCGA-L5-A4OQ | TJP2|FXN | TJP2 | FXN | 9 | 9 | 1 | 1 | 4 | 55 | 53 | 1.5 | 71766687 | 71661301 | tier1 | 5UTR-CDS | 17843 | NA | 0 |
| ESCA | TCGA-2H-A9GJ-01A | TCGA-2H-A9GJ | TNFRSF11A|KIAA1468 | TNFRSF11A | KIAA1468 | 18 | 18 | 1 | 1 | 9 | 34 | 31 | 3.1 | 59992660 | 59911997 | tier1 | In-frame | 18336 | NA | 0 |
| ESCA | TCGA-2H-A9GI-01A | TCGA-2H-A9GI | TOLLIP|MUC5B | TOLLIP | MUC5B | 11 | 11 | -1 | 1 | 2 | 12 | 11 | 0.19 | 1307232 | 1273573 | tier2 | In-frame | 18426 | NA | 0 |
| ESCA | TCGA-L5-A8NI-01A | TCGA-L5-A8NI | UNK|KIAA0195 | UNK | KIAA0195 | 17 | 17 | 1 | 1 | 3 | 46 | 3 | 0.065 | 73781065 | 73467881 | tier1 | CDS-5UTR | 19262 | NA | 0 |
| ESCA | TCGA-R6-A8W5-01B | TCGA-R6-A8W5 | UVRAG|SLCO2B1 | UVRAG | SLCO2B1 | 11 | 11 | 1 | 1 | 4 | 37 | 33 | 0.66 | 75563045 | 74873700 | tier1 | In-frame | 19488 | NA | 0 |
| ESCA | TCGA-L5-A891-01A | TCGA-L5-A891 | WASF2|FGR | WASF2 | FGR | 1 | 1 | -1 | -1 | 2 | 23 | 21 | 0.55 | 27816497 | 27951662 | tier2 | 5UTR-5UTR | 19732 | non-validated | 0 |
| ESCA | TCGA-L5-A8NI-01A | TCGA-L5-A8NI | WNK2|SUSD3 | WNK2 | SUSD3 | 9 | 9 | 1 | 1 | 2 | 38 | 32 | 1.1 | 96031028 | 95838066 | tier2 | In-frame | 19897 | NA | 0 |
| ESCA | TCGA-LN-A8HZ-01A | TCGA-LN-A8HZ | WWP2|GSG1L | WWP2 | GSG1L | 16 | 16 | 1 | -1 | 4 | 20 | 16 | 0.8 | 69833198 | 27856382 | tier1 | In-frame | 19938 | NA | 0 |
| GBM | TCGA-76-4929-01A | TCGA-76-4929 | ADAM17|YWHAQ | ADAM17 | YWHAQ | 2 | 2 | -1 | -1 | 71 | 233 | 199 | 0.098 | 9675963 | 9731644 | tier1 | In-frame | 410 | NA | 0.37759 |
| GBM | TCGA-14-1034-02B | TCGA-14-1034 | ADAMTS17|LPAR1 | ADAMTS17 | LPAR1 | 15 | 9 | -1 | -1 | 20 | 16 | 12 | 2.8 | 100589062 | 113638002 | tier1 | Out-of-frame | 436 | validated | 0.36488 |
| GBM | TCGA-06-0178-01A | TCGA-06-0178 | AGAP2|TMEM67 | AGAP2 | TMEM67 | 12 | 8 | -1 | 1 | 43 | 59 | 44 | 2.6 | 58123422 | 94827533 | tier1 | In-frame | 629 | NA | 0.37552 |
| GBM | TCGA-06-2558-01A | TCGA-06-2558 | AKAP11|MRPS31 | AKAP11 | MRPS31 | 13 | 13 | 1 | -1 | 11 | 28 | 26 | 0.45 | 42882745 | 41303737 | tier1 | Out-of-frame | 723 | NA | 0.35599 |
| GBM | TCGA-27-1830-01A | TCGA-27-1830 | ANK2|ARHGAP10 | ANK2 | ARHGAP10 | 4 | 4 | 1 | 1 | 4 | 9 | 7 | 0.14 | 113970968 | 148944414 | tier1 | In-frame | 900 | NA | 0.3766 |
| GBM | TCGA-02-2483-01A | TCGA-02-2483 | ASTN2|ARHGDIG | ASTN2 | ARHGDIG | 9 | 16 | -1 | 1 | 19 | 58 | 48 | 0.045 | 119976637 | 332025 | tier1 | In-frame | 1546 | non-validated | 0.35708 |
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