The Cancer LncRNome Atlas



Cross-cancer Type Analysis

TCLA currently contains data from 13 cancer types of the TCGA studies. The raw data of each platform were retrieved from the TCGA Data Portal and the NCI's Cancer Genomics Hub (CGHub).

Each link below contains information about lncRNA expression, copy number alterations (focal alterations and high-frequent alterations), promoter methylation and cancer-associated SNPs in multiple cancer types.

Please select the analysis type that you are interested in:

   

Detectable lncRNAs in multiple cancer types

To ensure detection reliability and reduce background noise, we applied two filters in each cancer type: the first eliminates any gene whose 50th percentile RPKM value is equal to or less than 0; the second filter selects only genes whose 90th percentile RPKM value is greater than 0.1.

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Ensembl IDNumber of
Cancer Types
Cancer Types sharing Detectable Expression
ENSG000002275741UCEC
ENSG000002366511UCEC
ENSG000002305521UCEC
ENSG000002316891UCEC
ENSG000002252161UCEC
ENSG000002311891UCEC
ENSG000002370871UCEC
ENSG000002259881UCEC
ENSG000002614111UCEC
ENSG000002372591UCEC
ENSG000002434671UCEC
ENSG000002261431UCEC
ENSG000002243881UCEC
ENSG000002682921UCEC
ENSG000002437621UCEC
ENSG000002699871UCEC
ENSG000002699721UCEC
ENSG000002548351UCEC
ENSG000001001011UCEC
ENSG000002247941UCEC
ENSG000002323631UCEC
ENSG000002269541UCEC
ENSG000002682791UCEC
ENSG000002324901UCEC
ENSG000002306981UCEC
ENSG000002350581UCEC
ENSG000002402411UCEC
ENSG000002406661UCEC
ENSG000002440781UCEC
ENSG000002414791UCEC
ENSG000002425781UCEC
ENSG000002497841UCEC
ENSG000002483991UCEC
ENSG000002481381UCEC
ENSG000002482561UCEC
ENSG000002496141UCEC
ENSG000002483561UCEC
ENSG000002509101UCEC
ENSG000002487741UCEC
ENSG000002722341UCEC
ENSG000002501221UCEC
ENSG000002537441UCEC
ENSG000002503481UCEC
ENSG000002377141UCEC
ENSG000002306121UCEC
ENSG000002579381UCEC
ENSG000002542951UCEC
ENSG000002281701UCEC
ENSG000002377861UCEC
ENSG000002271981UCEC


  Total Page: 164 Total amount: 8189
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