The Cancer LncRNome Atlas



Prostate Adenocarcinoma (PRAD)

TCLA currently contains information about lncRNA expression, copy number alterations (focal alterations and high-frequent alterations), promoter methylation and cancer-associated SNPs for each cancer type.

Please select the data type that you are interested in:

 

Detectable lncRNAs in PRAD

To ensure detection reliability and reduce background noise, we applied two filters in each cancer type: the first eliminates any gene whose 50th percentile RPKM value is equal to or less than 0; the second filter selects only genes whose 90th percentile RPKM value is greater than 0.1.

 
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Ensembl IDChromosomeStartEndStrandDysregulatedFold Change(T/N)
ENSG00000260118chrX6723331267234743-  
ENSG00000231651chrX6967280869675844-Yes (Up)2.33
ENSG00000228427chrX7040340970418025-  
ENSG00000269911chrX7199743271998921+  
ENSG00000226725chrX7221822772222695-  
ENSG00000231963chrX7230000672304474+  
ENSG00000225470chrX7316415973290243+  
ENSG00000228906chrX7316880873169393+  
ENSG00000230590chrX7318379073513409-  
ENSG00000270223chrX7322922473231303-  
ENSG00000271430chrX7342006473461983-  
ENSG00000271533chrX7342981173433495-  
ENSG00000259640chrX8375503383757461-  
ENSG00000261295chrX9992832799928978+  
ENSG00000228609chrX100258821100262962-  
ENSG00000271147chrX101854440101969599+  
ENSG00000223546chrX102024089102140334+  
ENSG00000239407chrX102139342102161086+  
ENSG00000234405chrX102752451102755245+  
ENSG00000228885chrX102753723102754210+Yes (Down)0.37
ENSG00000231154chrX102942212102946700+  
ENSG00000261409chrX107963179107968174-  
ENSG00000237863chrX107979770107982133+  
ENSG00000260802chrX110754890110765627+Yes (Down)0.42
ENSG00000224281chrX118599997118603061-  
ENSG00000227285chrX119055224119056803-  
ENSG00000234493chrX119144675119149501-Yes (Up)6.25
ENSG00000244439chrX119745184119754929+  
ENSG00000229033chrX122867024122868144+  
ENSG00000232412chrX123093083123095191-  
ENSG00000213468chrX130836678130964671-  
ENSG00000232160chrX131351175131566890+  
ENSG00000223749chrX133677367133680741-  
ENSG00000196972chrX134229058134232664-Yes (Down)0.37
ENSG00000178947chrX134555868134561999+  
ENSG00000233093chrX135721702135724588+  
ENSG00000232611chrX135923090135929956-  
ENSG00000234062chrX135991554136103789+  
ENSG00000226031chrX137793614137798779+  
ENSG00000241489chrX148564621148614672-  
ENSG00000238039chrX148593039148607803-  
ENSG00000241769chrX148614831148622358-  
ENSG00000225261chrX148629755148631380-  
ENSG00000184324chrX151922445151928738+  
ENSG00000224216chrX154564167154581271-  
ENSG00000270726chrX155233883155255299+  
ENSG00000185203chrX155244288155246502-Yes (Up)41666.67
ENSG00000233070chrY28348852870667-Yes (Down)0.48
ENSG00000231535chrY28709532970313+  
ENSG00000229308chrY39045383968361+  
ENSG00000234795chrY76106367677302-  
ENSG00000233864chrY1477426514804162+  
ENSG00000230663chrY1966468019691634-  
ENSG00000176728chrY2103438721239302-  
ENSG00000260197chrY2185382721856492-  


 
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