Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BLCA | TCGA-DK-A3X2-01A | TCGA-DK-A3X2 | KLHL5|LNX1 | KLHL5 | LNX1 | 4 | 4 | 1 | -1 | 2 | 1 | 1 | 0.024 | 39046716 | 54374394 | tier2 | 5UTR-CDS | 9073 | NA | 0.37433 |
| LIHC | TCGA-DD-A4NO-01A | TCGA-DD-A4NO | KLHL5|HLA-F | KLHL5 | HLA-F | 4 | 6 | 1 | 1 | 32 | 17 | 17 | 0.18 | 39128477 | 29705899 | tier1 | NA | 9072 | NA | 0.36103 |
| BRCA | TCGA-A2-A25D-01A | TCGA-A2-A25D | MTCH2|FNBP4 | MTCH2 | FNBP4 | 11 | 11 | -1 | -1 | 17 | 18 | 16 | 0.03 | 47660251 | 47741638 | tier1 | In-frame | 10777 | NA | 0.37221 |
| OV | TCGA-23-2077-01A | TCGA-23-2077 | MTCH2|FHIT | MTCH2 | FHIT | 11 | 3 | -1 | -1 | 5 | 39 | 36 | 1.8 | 47660251 | 59738047 | tier1 | In-frame | 10776 | NA | 0.3616 |
| PCPG | TCGA-RW-A688-01A | TCGA-RW-A688 | TECTA|FOXN3 | TECTA | FOXN3 | 11 | 14 | 1 | -1 | 2 | 2 | 2 | 0.6 | 121000920 | 89629313 | tier2 | Out-of-frame | 17653 | NA | 0 |
| UCEC | TCGA-A5-A1OH-01A | TCGA-A5-A1OH | SIAE|GRIK4 | SIAE | GRIK4 | 11 | 11 | -1 | 1 | 2 | 5 | 5 | 0.3 | 124530524 | 120823564 | tier3 | In-frame | 15905 | NA | 0 |
| GBM | TCGA-06-0125-02A | TCGA-06-0125 | SIAE|HYLS1 | SIAE | HYLS1 | 11 | 11 | -1 | 1 | 3 | 2 | 1 | 0.12 | 124539256 | 125769239 | tier4 | CDS-5UTR | 15906 | non-validated | 0 |
| SKCM | TCGA-ER-A195-06A | TCGA-ER-A195 | DCPS|TIRAP | DCPS | TIRAP | 11 | 11 | 1 | 1 | 3 | 5 | 5 | 1.4 | 126176639 | 126160357 | tier1 | CDS-5UTR | 4609 | NA | 0.36785 |
| LUSC | TCGA-66-2766-01A | TCGA-66-2766 | SUV420H1|SLITRK4 | SUV420H1 | SLITRK4 | 11 | X | -1 | -1 | 3 | 1 | 1 | 0.042 | 67980944 | 142718974 | tier4 | 5UTR-5UTR | 17210 | non-validated | 0 |
| BLCA | TCGA-DK-A1AC-01A | TCGA-DK-A1AC | SUV420H1|MYO1D | SUV420H1 | MYO1D | 11 | 17 | -1 | -1 | 31 | 15 | 14 | 0.31 | 67947599 | 30965853 | tier1 | Out-of-frame | 17208 | NA | 0 |
| BRCA | TCGA-UL-AAZ6-01A | TCGA-UL-AAZ6 | SUV420H1|SUPT5H | SUV420H1 | SUPT5H | 11 | 19 | -1 | 1 | 5 | 15 | 15 | 2.7 | 67980944 | 39955438 | tier1 | 5UTR-CDS | 17212 | NA | 0 |
| ESCA | TCGA-L5-A8NI-01A | TCGA-L5-A8NI | SUV420H1|RNPS1 | SUV420H1 | RNPS1 | 11 | 16 | -1 | -1 | 15 | 129 | 115 | 0.13 | 67980944 | 2305727 | tier1 | 5UTR-CDS | 17209 | NA | 0 |
| LIHC | TCGA-DD-A1EK-01A | TCGA-DD-A1EK | SUV420H1|C11orf24 | SUV420H1 | C11orf24 | 11 | 11 | -1 | -1 | 5 | 6 | 5 | 1.5 | 67980944 | 68035719 | tier1 | 5UTR-5UTR | 17204 | NA | 0 |
| LIHC | TCGA-CC-5264-01A | TCGA-CC-5264 | SUV420H1|CPSF7 | SUV420H1 | CPSF7 | 11 | 11 | -1 | -1 | 21 | 9 | 3 | 0.067 | 67947599 | 61172176 | tier1 | CDS-3UTR | 17206 | NA | 0 |
| LUAD | TCGA-38-4630-01A | TCGA-38-4630 | SUV420H1|MTL5 | SUV420H1 | MTL5 | 11 | 11 | -1 | -1 | 35 | 58 | 52 | 0.21 | 67980605 | 68480875 | tier1 | 5UTR-CDS | 17207 | validated | 0 |
| READ | TCGA-AG-3731-01A | TCGA-AG-3731 | SUV420H1|STXBP1 | SUV420H1 | STXBP1 | 11 | 9 | -1 | 1 | 14 | 31 | 29 | 0.81 | 67980944 | 130413882 | tier1 | 5UTR-CDS | 17211 | NA | 0 |
| SARC | TCGA-3B-A9HR-01A | TCGA-3B-A9HR | SUV420H1|CPEB4 | SUV420H1 | CPEB4 | 11 | 5 | -1 | 1 | 2 | 2 | 2 | 0.16 | 67947599 | 173359453 | tier2 | Out-of-frame | 17205 | NA | 0 |
| UCS | TCGA-N5-A4RT-01A | TCGA-N5-A4RT | NRXN2|NSD1 | NRXN2 | NSD1 | 11 | 5 | -1 | 1 | 5 | 3 | 3 | 3.1 | 64387766 | 176665238 | tier1 | Out-of-frame | 11765 | NA | 0.37778 |
| ESCA | TCGA-IG-A3I8-01A | TCGA-IG-A3I8 | ST3GAL4|FGF19 | ST3GAL4 | FGF19 | 11 | 11 | 1 | -1 | 9 | 49 | 47 | 0.59 | 126225737 | 69518132 | tier1 | 5UTR-CDS | 16941 | NA | 0 |
| ESCA | TCGA-IG-A3I8-01A | TCGA-IG-A3I8 | ST3GAL4|C11orf70 | ST3GAL4 | C11orf70 | 11 | 11 | 1 | 1 | 4 | 117 | 95 | 0.15 | 126279306 | 101929611 | tier1 | In-frame | 16940 | NA | 0 |
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