Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LGG | TCGA-FG-7643-01A | TCGA-FG-7643 | CPE|ARHGEF4 | CPE | ARHGEF4 | 4 | 2 | 1 | 1 | 2 | 2 | 2 | 1.4 | 166419472 | 131674224 | tier3 | 3UTR-5UTR | 4115 | non-validated | 0.37769 |
| LGG | TCGA-HT-7873-01B | TCGA-HT-7873 | CPE|PLEKHA5 | CPE | PLEKHA5 | 4 | 12 | 1 | 1 | 2 | 5 | 2 | 0.56 | 166419458 | 19441012 | tier2 | NA | 4116 | NA | 0.36891 |
| BLCA | TCGA-PQ-A6FI-01A | TCGA-PQ-A6FI | CLCN3|TDO2 | CLCN3 | TDO2 | 4 | 4 | 1 | 1 | 15 | 20 | 19 | 1.4 | 170601358 | 156838547 | tier1 | Out-of-frame | 3763 | NA | 0.36557 |
| BRCA | TCGA-AN-A04C-01A | TCGA-AN-A04C | CLCN3|SMAD1 | CLCN3 | SMAD1 | 4 | 4 | 1 | 1 | 49 | 56 | 50 | 0.5 | 170557239 | 146474936 | tier1 | In-frame | 3762 | NA | 0.38354 |
| BRCA | TCGA-AR-A2LR-01A | TCGA-AR-A2LR | CLCN3|UBE2D3 | CLCN3 | UBE2D3 | 4 | 4 | 1 | -1 | 4 | 7 | 6 | 0.27 | 170557239 | 103731012 | tier1 | Out-of-frame | 3764 | NA | 0.37551 |
| STAD | TCGA-VQ-A92D-01A | TCGA-VQ-A92D | CLCN3|PALLD | CLCN3 | PALLD | 4 | 4 | 1 | 1 | 2 | 24 | 23 | 0.44 | 170557239 | 169589341 | tier2 | Out-of-frame | 3761 | NA | 0.36646 |
| BLCA | TCGA-DK-A3X1-01A | TCGA-DK-A3X1 | SLC2A9|RAD51 | SLC2A9 | RAD51 | 4 | 15 | -1 | 1 | 5 | 4 | 4 | 1.9 | 10020599 | 40998375 | tier1 | In-frame | 16140 | NA | 0 |
| CESC | TCGA-VS-A8QF-01A | TCGA-VS-A8QF | SLC2A9|CCDC84 | SLC2A9 | CCDC84 | 4 | 11 | -1 | 1 | 5 | 5 | 5 | 0.99 | 9982216 | 118869140 | tier1 | In-frame | 16139 | NA | 0 |
| BLCA | TCGA-KQ-A41P-01A | TCGA-KQ-A41P | NEIL3|AGA | NEIL3 | AGA | 4 | 4 | 1 | -1 | 4 | 5 | 4 | 2.2 | 178272703 | 178352962 | tier1 | In-frame | 11351 | NA | 0.34946 |
| BRCA | TCGA-BH-A1FD-01A | TCGA-BH-A1FD | WHSC1|TACC3 | WHSC1 | TACC3 | 4 | 4 | 1 | 1 | 30 | 20 | 19 | 0.24 | 1906105 | 1742553 | tier1 | In-frame | 19836 | NA | 0 |
| HNSC | TCGA-HD-8224-01A | TCGA-HD-8224 | WHSC1|PHTF2 | WHSC1 | PHTF2 | 4 | 7 | 1 | 1 | 41 | 14 | 14 | 0.011 | 1902978 | 77522925 | tier1 | In-frame | 19833 | NA | 0 |
| HNSC | TCGA-HD-7753-01A | TCGA-HD-7753 | WHSC1|PIBF1 | WHSC1 | PIBF1 | 4 | 13 | 1 | 1 | 130 | 172 | 165 | 0.079 | 1873269 | 73539412 | tier1 | 5UTR-CDS | 19834 | validated | 0 |
| LGG | TCGA-DH-A669-01A | TCGA-DH-A669 | WHSC1|CPLX1 | WHSC1 | CPLX1 | 4 | 4 | 1 | -1 | 216 | 104 | 85 | 2.3 | 1920350 | 786396 | tier1 | Out-of-frame | 19828 | validated | 0 |
| LGG | TCGA-WY-A859-01A | TCGA-WY-A859 | WHSC1|QKI | WHSC1 | QKI | 4 | 6 | 1 | 1 | 2 | 4 | 3 | 0.24 | 1959763 | 163876311 | tier3 | Out-of-frame | 19835 | NA | 0 |
| LUAD | TCGA-38-4630-01A | TCGA-38-4630 | WHSC1|FAM53A | WHSC1 | FAM53A | 4 | 4 | 1 | -1 | 45 | 46 | 43 | 0.86 | 1957915 | 1619838 | tier1 | NA | 19830 | non-validated | 0 |
| LUAD | TCGA-38-4630-01A | TCGA-38-4630 | WHSC1|GSDMB | WHSC1 | GSDMB | 4 | 17 | 1 | -1 | 42 | 48 | 45 | 1.7 | 1957915 | 38068750 | tier1 | In-frame | 19831 | non-validated | 0 |
| UCS | TCGA-N5-A4RA-01A | TCGA-N5-A4RA | WHSC1|NUP210L | WHSC1 | NUP210L | 4 | 1 | 1 | -1 | 31 | 9 | 6 | 1.8 | 1902978 | 153984846 | tier1 | In-frame | 19832 | NA | 0 |
| LUAD | TCGA-55-A48Z-01A | TCGA-55-A48Z | STIM2|KIAA0146 | STIM2 | KIAA0146 | 4 | 8 | 1 | 1 | 2 | 1 | 1 | 0.74 | 27019606 | 48192450 | tier2 | Out-of-frame | 17044 | NA | 0 |
| LUSC | TCGA-22-A5C4-01A | TCGA-22-A5C4 | STIM2|GATAD2A | STIM2 | GATAD2A | 4 | 19 | 1 | 1 | 28 | 35 | 30 | 0.088 | 26921256 | 19576149 | tier1 | CDS-5UTR | 17043 | NA | 0 |
| HNSC | TCGA-CV-7238-01A | TCGA-CV-7238 | KLHL5|SLC16A2 | KLHL5 | SLC16A2 | 4 | X | 1 | 1 | 3 | 5 | 5 | 1.3 | 39046716 | 73740825 | tier1 | 5UTR-CDS | 9074 | NA | 0.35265 |
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