Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| STAD | TCGA-HU-A4GH-01A | TCGA-HU-A4GH | ABCC3|XYLT2 | ABCC3 | XYLT2 | 17 | 17 | 1 | 1 | 3 | 56 | 55 | 0.18 | 48755580 | 48435568 | tier1 | In-frame | 62 | NA | 0.34721 |
| BLCA | TCGA-XF-AAMX-01A | TCGA-XF-AAMX | SLC16A6|CA4 | SLC16A6 | CA4 | 17 | 17 | -1 | 1 | 2 | 1 | 1 | 0.54 | 66268780 | 58232675 | tier2 | In-frame | 16032 | NA | 0 |
| COAD | TCGA-D5-6929-01A | TCGA-D5-6929 | PRKAR1A|PITPNC1 | PRKAR1A | PITPNC1 | 17 | 17 | 1 | 1 | 57 | 31 | 28 | 0.96 | 66511717 | 65528918 | tier1 | In-frame | 13532 | NA | 0.37312 |
| LUAD | TCGA-78-7149-01A | TCGA-78-7149 | PRKAR1A|FOXP1 | PRKAR1A | FOXP1 | 17 | 3 | 1 | -1 | 2 | 82 | 15 | 0.27 | 66528899 | 71007472 | tier4 | NA | 13531 | NA | 0.37807 |
| SKCM | TCGA-GN-A4U8-06A | TCGA-GN-A4U8 | PMP22|AC217773.1 | PMP22 | AC217773.1 | 17 | 17 | -1 | 1 | 19 | 40 | 38 | 0.1 | 15162411 | 44273734 | tier1 | NA | 13111 | NA | 0.33979 |
| BLCA | TCGA-UY-A9PD-01A | TCGA-UY-A9PD | PHF12|PIPOX | PHF12 | PIPOX | 17 | 17 | -1 | 1 | 5 | 8 | 6 | 0.41 | 27277083 | 27371877 | tier1 | Out-of-frame | 12700 | NA | 0.36467 |
| LUAD | TCGA-38-4630-01A | TCGA-38-4630 | PHF12|PLXDC1 | PHF12 | PLXDC1 | 17 | 17 | -1 | -1 | 47 | 23 | 20 | 3.7 | 27277083 | 37296085 | tier1 | Out-of-frame | 12701 | validated | 0.36584 |
| LUAD | TCGA-05-4433-01A | TCGA-05-4433 | PHF12|TMEM97 | PHF12 | TMEM97 | 17 | 17 | -1 | 1 | 3 | 1 | 1 | 0.43 | 27277083 | 26652529 | tier2 | Out-of-frame | 12703 | NA | 0.3632 |
| OV | TCGA-24-2023-01A | TCGA-24-2023 | PHF12|SEZ6 | PHF12 | SEZ6 | 17 | 17 | -1 | -1 | 5 | 18 | 16 | 0.017 | 27277083 | 27309057 | tier1 | Out-of-frame | 12702 | NA | 0.37177 |
| PRAD | TCGA-G9-7509-01A | TCGA-G9-7509 | PHF12|LIG3 | PHF12 | LIG3 | 17 | 17 | -1 | 1 | 7 | 3 | 3 | 0.18 | 27277083 | 33324757 | tier1 | In-frame | 12699 | NA | 0.37068 |
| LGG | TCGA-E1-5304-01A | TCGA-E1-5304 | NFKB1|MANBA | NFKB1 | MANBA | 4 | 4 | 1 | -1 | 2 | 3 | 1 | 0.12 | 103422945 | 103571858 | tier2 | 5UTR-CDS | 11510 | NA | 0.38762 |
| PRAD | TCGA-G9-6377-01A | TCGA-G9-6377 | NFKB1|LHFPL3 | NFKB1 | LHFPL3 | 4 | 7 | 1 | 1 | 5 | 4 | 3 | 1.6 | 103446714 | 104546634 | tier1 | Out-of-frame | 11509 | NA | 0.38787 |
| SARC | TCGA-DX-A8BU-01A | TCGA-DX-A8BU | NFKB1|BANK1 | NFKB1 | BANK1 | 4 | 4 | 1 | 1 | 3 | 11 | 11 | 0.15 | 103516138 | 102984232 | tier1 | Out-of-frame | 11508 | NA | 0.38864 |
| LUSC | TCGA-22-5481-01A | TCGA-22-5481 | MANBA|LIMCH1 | MANBA | LIMCH1 | 4 | 4 | -1 | 1 | 18 | 8 | 7 | 0.75 | 103681875 | 41600937 | tier1 | In-frame | 9822 | NA | 0.34913 |
| UCS | TCGA-NA-A4QV-01A | TCGA-NA-A4QV | MAPK10|PTPN13 | MAPK10 | PTPN13 | 4 | 4 | -1 | 1 | 4 | 4 | 3 | 0.1 | 87275683 | 87679413 | tier1 | 5UTR-CDS | 9937 | NA | 0.38905 |
| LUSC | TCGA-18-3421-01A | TCGA-18-3421 | MAPK10|UGT8 | MAPK10 | UGT8 | 4 | 4 | -1 | 1 | 6 | 6 | 4 | 0.049 | 87374183 | 115544035 | tier2 | 5UTR-5UTR | 9938 | NA | 0.3877 |
| HNSC | TCGA-CN-6010-01A | TCGA-CN-6010 | MAPK10|FAM190A | MAPK10 | FAM190A | 4 | 4 | -1 | 1 | 14 | 6 | 6 | 0.25 | 87374183 | 91229395 | tier1 | 5UTR-5UTR | 9936 | NA | 0.38643 |
| LGG | TCGA-DH-A669-01A | TCGA-DH-A669 | MAPK10|ARHGAP24 | MAPK10 | ARHGAP24 | 4 | 4 | -1 | 1 | 13 | 4 | 4 | 0.68 | 87275683 | 86893189 | tier1 | 5UTR-CDS | 9933 | non-validated | 0.38865 |
| PRAD | TCGA-KK-A8ID-01A | TCGA-KK-A8ID | MAPK10|FAM13A | MAPK10 | FAM13A | 4 | 4 | -1 | -1 | 8 | 4 | 4 | 0.02 | 87115489 | 89859392 | tier1 | Out-of-frame | 9935 | NA | 0.38643 |
| HNSC | TCGA-QK-A8ZA-01A | TCGA-QK-A8ZA | KLHL2|ARHGEF7 | KLHL2 | ARHGEF7 | 4 | 13 | 1 | 1 | 3 | 2 | 2 | 2.2 | 166184511 | 111929934 | tier1 | Out-of-frame | 9060 | NA | 0.38238 |
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