TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
PRAD	TCGA-CH-5740-01A	TCGA-CH-5740	CPD\|PIGW	CPD	PIGW	17	17	1	1	24	23	21	0.73	28706744	34892943	tier1	CDS-5UTR	4111	NA	0.33537
SARC	TCGA-DX-A3M1-01A	TCGA-DX-A3M1	CPD\|TMEM132E	CPD	TMEM132E	17	17	1	1	5	2	2	1.4	28712254	32953146	tier1	In-frame	4114	non-validated	0.33609
LUSC	TCGA-33-6737-01A	TCGA-33-6737	ALDH3A1\|MYH9	ALDH3A1	MYH9	17	22	-1	-1	15	130	120	0.15	19651572	36723533	tier1	5UTR-CDS	801	NA	0.37893
THYM	TCGA-ZB-A96L-01A	TCGA-ZB-A96L	ALDH3A1\|NF1	ALDH3A1	NF1	17	17	-1	1	2	1	1	3	19651572	29585362	tier2	5UTR-CDS	802	NA	0.37319
CESC	TCGA-VS-A9UO-01A	TCGA-VS-A9UO	LGALS3BP\|CLSPN	LGALS3BP	CLSPN	17	1	-1	-1	2	21	8	0.38	76967338	36214444	tier4	NA	9307	NA	0.37936
LUAD	TCGA-99-7458-01A	TCGA-99-7458	LGALS3BP\|ELK3	LGALS3BP	ELK3	17	12	-1	1	2	23	11	1.2	76967338	96588323	tier4	3UTR-5UTR	9308	NA	0.38082
BLCA	TCGA-FD-A3NA-01A	TCGA-FD-A3NA	KAT2A\|STAT5B	KAT2A	STAT5B	17	17	-1	-1	6	3	3	0.013	40269053	40354826	tier1	Out-of-frame	8522	NA	0.38396
OV	TCGA-13-A5FT-01A	TCGA-13-A5FT	EZH1\|MAP3K14	EZH1	MAP3K14	17	17	-1	-1	3	12	11	2.6	40861864	43368131	tier1	CDS-5UTR	5958	NA	0.37911
PRAD	TCGA-XQ-A8TA-01A	TCGA-XQ-A8TA	EZH1\|IGFBP5	EZH1	IGFBP5	17	2	-1	-1	9	8	8	0.085	40879653	217543802	tier1	Out-of-frame	5957	NA	0.36877
BRCA	TCGA-B6-A0IG-01A	TCGA-B6-A0IG	EZH1\|TOP2A	EZH1	TOP2A	17	17	-1	-1	5	4	3	0.079	40854895	38561135	tier2	Out-of-frame	5960	NA	0.37582
OV	TCGA-36-1574-01A	TCGA-36-1574	EZH1\|ZC3H3	EZH1	ZC3H3	17	8	-1	-1	27	16	13	0.16	40880843	144523290	tier1	In-frame	5961	non-validated	0.36158
PCPG	TCGA-WB-A81F-01A	TCGA-WB-A81F	EZH1\|PDSS2	EZH1	PDSS2	17	6	-1	-1	19	11	9	2	40879653	107595431	tier1	Out-of-frame	5959	NA	0.35765
SKCM	TCGA-EE-A2MU-06A	TCGA-EE-A2MU	VAT1\|COL5A1	VAT1	COL5A1	17	9	-1	1	2	1	1	0.006	41166624	137533620	tier3	3UTR-5UTR	19514	NA	0
SKCM	TCGA-ER-A19W-06A	TCGA-ER-A19W	VAT1\|BCAS3	VAT1	BCAS3	17	17	-1	1	2	20	2	1.2	41166624	59465980	tier3	NA	19513	NA	0
SKCM	TCGA-ER-A2NE-06A	TCGA-ER-A2NE	VAT1\|CTNND1	VAT1	CTNND1	17	11	-1	1	3	5	5	0.64	41166624	57574387	tier1	3UTR-CDS	19515	NA	0
THYM	TCGA-ZB-A961-01A	TCGA-ZB-A961	HDAC5\|SLC13A2	HDAC5	SLC13A2	17	17	-1	1	12	6	6	0.003	42188097	26816232	tier1	Out-of-frame	7626	NA	0.37339
LGG	TCGA-TQ-A7RP-01A	TCGA-TQ-A7RP	HDAC5\|MYO18A	HDAC5	MYO18A	17	17	-1	-1	12	3	2	0.01	42194862	27494039	tier1	CDS-5UTR	7625	NA	0.37619
KIRC	TCGA-CW-5584-01A	TCGA-CW-5584	ABCC3\|BCAN	ABCC3	BCAN	17	1	1	1	8	9	9	0.18	48751019	156627467	tier1	In-frame	61	NA	0.36824
BRCA	TCGA-B6-A0IK-01A	TCGA-B6-A0IK	ABCC3\|AC217773.1	ABCC3	AC217773.1	17	17	1	1	2	1	1	100	48736729	44273734	tier2	NA	59	NA	0.34646
STAD	TCGA-BR-8590-01A	TCGA-BR-8590	ABCC3\|ACSF2	ABCC3	ACSF2	17	17	1	1	8	17	16	0.41	48712342	48548389	tier1	In-frame	60	NA	0.34919

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