Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-JL-A3YW-01A | TCGA-JL-A3YW | RPS6KB1|VMP1 | RPS6KB1 | VMP1 | 17 | 17 | 1 | 1 | 350 | 310 | 292 | 1.4 | 57970686 | 57915656 | tier1 | Out-of-frame | 15088 | NA | 0 |
| CESC | TCGA-C5-A7X5-01A | TCGA-C5-A7X5 | RPS6KB1|VMP1 | RPS6KB1 | VMP1 | 17 | 17 | 1 | 1 | 10 | 16 | 15 | 1.4 | 58009083 | 57895073 | tier1 | Out-of-frame | 15080 | NA | 0 |
| HNSC | TCGA-BA-6868-01B | TCGA-BA-6868 | RPS6KB1|VMP1 | RPS6KB1 | VMP1 | 17 | 17 | 1 | 1 | 93 | 38 | 31 | 1.4 | 57990165 | 57915656 | tier1 | Out-of-frame | 15078 | NA | 0 |
| HNSC | TCGA-CQ-6218-01A | TCGA-CQ-6218 | RPS6KB1|VMP1 | RPS6KB1 | VMP1 | 17 | 17 | 1 | 1 | 14 | 6 | 5 | 1.4 | 57992064 | 57915656 | tier1 | Out-of-frame | 15081 | NA | 0 |
| HNSC | TCGA-CR-7369-01A | TCGA-CR-7369 | RPS6KB1|VMP1 | RPS6KB1 | VMP1 | 17 | 17 | 1 | 1 | 65 | 39 | 35 | 1.4 | 57970686 | 57915656 | tier1 | Out-of-frame | 15082 | NA | 0 |
| HNSC | TCGA-P3-A6T4-01A | TCGA-P3-A6T4 | RPS6KB1|VMP1 | RPS6KB1 | VMP1 | 17 | 17 | 1 | 1 | 34 | 65 | 56 | 1.4 | 57990165 | 57886157 | tier1 | In-frame | 15089 | NA | 0 |
| LUAD | TCGA-49-4505-01A | TCGA-49-4505 | RPS6KB1|VMP1 | RPS6KB1 | VMP1 | 17 | 17 | 1 | 1 | 71 | 69 | 67 | 1.4 | 57990165 | 57915656 | tier1 | Out-of-frame | 15064 | NA | 0 |
| LUAD | TCGA-49-AAQV-01A | TCGA-49-AAQV | RPS6KB1|VMP1 | RPS6KB1 | VMP1 | 17 | 17 | 1 | 1 | 11 | 25 | 21 | 1.4 | 58013902 | 57915656 | tier1 | Out-of-frame | 15065 | NA | 0 |
| LUAD | TCGA-50-6592-01A | TCGA-50-6592 | RPS6KB1|VMP1 | RPS6KB1 | VMP1 | 17 | 17 | 1 | 1 | 22 | 28 | 26 | 1.4 | 58007535 | 57915656 | tier1 | In-frame | 15067 | NA | 0 |
| LUAD | TCGA-62-A46O-01A | TCGA-62-A46O | RPS6KB1|VMP1 | RPS6KB1 | VMP1 | 17 | 17 | 1 | 1 | 26 | 30 | 28 | 1.4 | 57970686 | 57886157 | tier1 | In-frame | 15068 | NA | 0 |
| LUAD | TCGA-69-7978-01A | TCGA-69-7978 | RPS6KB1|VMP1 | RPS6KB1 | VMP1 | 17 | 17 | 1 | 1 | 12 | 17 | 17 | 1.4 | 57990165 | 57886157 | tier1 | In-frame | 15069 | NA | 0 |
| LUAD | TCGA-73-4676-01A | TCGA-73-4676 | RPS6KB1|VMP1 | RPS6KB1 | VMP1 | 17 | 17 | 1 | 1 | 16 | 24 | 22 | 1.4 | 57970686 | 57915656 | tier1 | Out-of-frame | 15070 | NA | 0 |
| LUAD | TCGA-86-7711-01A | TCGA-86-7711 | RPS6KB1|VMP1 | RPS6KB1 | VMP1 | 17 | 17 | 1 | 1 | 123 | 205 | 195 | 1.4 | 58003943 | 57917129 | tier4 | Out-of-frame | 15072 | NA | 0 |
| LUAD | TCGA-86-8056-01A | TCGA-86-8056 | RPS6KB1|VMP1 | RPS6KB1 | VMP1 | 17 | 17 | 1 | 1 | 65 | 108 | 94 | 1.4 | 57970686 | 57915656 | tier1 | Out-of-frame | 15073 | NA | 0 |
| LUAD | TCGA-93-A4JQ-01A | TCGA-93-A4JQ | RPS6KB1|VMP1 | RPS6KB1 | VMP1 | 17 | 17 | 1 | 1 | 82 | 45 | 44 | 1.4 | 57992064 | 57842332 | tier4 | In-frame | 15074 | NA | 0 |
| LUSC | TCGA-77-8153-01A | TCGA-77-8153 | RPS6KB1|VMP1 | RPS6KB1 | VMP1 | 17 | 17 | 1 | 1 | 2 | 1 | 1 | 1.4 | 57970686 | 57886157 | tier3 | In-frame | 15071 | NA | 0 |
| LUSC | TCGA-94-8035-01A | TCGA-94-8035 | RPS6KB1|VMP1 | RPS6KB1 | VMP1 | 17 | 17 | 1 | 1 | 14 | 12 | 11 | 1.4 | 57992064 | 57889031 | tier1 | In-frame | 15075 | NA | 0 |
| OV | TCGA-25-1315-01A | TCGA-25-1315 | RPS6KB1|VMP1 | RPS6KB1 | VMP1 | 17 | 17 | 1 | 1 | 17 | 10 | 10 | 1.4 | 57970686 | 57886157 | tier1 | In-frame | 15063 | NA | 0 |
| SKCM | TCGA-ER-A19H-06A | TCGA-ER-A19H | RPS6KB1|VMP1 | RPS6KB1 | VMP1 | 17 | 17 | 1 | 1 | 115 | 137 | 126 | 1.4 | 57970686 | 57886157 | tier1 | In-frame | 15084 | NA | 0 |
| SKCM | TCGA-W3-AA21-06A | TCGA-W3-AA21 | RPS6KB1|VMP1 | RPS6KB1 | VMP1 | 17 | 17 | 1 | 1 | 16 | 13 | 13 | 1.4 | 57990165 | 57915656 | tier1 | Out-of-frame | 15091 | NA | 0 |
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