TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
BRCA	TCGA-BH-A1FM-01A	TCGA-BH-A1FM	TUBD1\|HEATR6	TUBD1	HEATR6	17	17	-1	-1	15	8	7	0.34	57970058	58128338	tier1	5UTR-CDS	18933	NA	0
BRCA	TCGA-3C-AALI-01A	TCGA-3C-AALI	TUBD1\|TIAF1	TUBD1	TIAF1	17	17	-1	-1	7	19	19	2.8	57970058	27401932	tier4	5UTR-5UTR	18936	NA	0
LIHC	TCGA-DD-A1EJ-01A	TCGA-DD-A1EJ	TUBD1\|USP32	TUBD1	USP32	17	17	-1	-1	5	3	3	0.051	57951900	58300947	tier1	In-frame	18939	non-validated	0
LIHC	TCGA-DD-AADC-01A	TCGA-DD-AADC	TUBD1\|VMP1	TUBD1	VMP1	17	17	-1	1	4	7	6	0.19	57963444	57851115	tier4	Out-of-frame	18941	NA	0
LUAD	TCGA-55-6969-01A	TCGA-55-6969	TUBD1\|TOM1L1	TUBD1	TOM1L1	17	17	-1	1	4	5	3	0.72	57963444	52990027	tier1	CDS-5UTR	18937	NA	0
LUAD	TCGA-49-6745-01A	TCGA-49-6745	TUBD1\|USP32	TUBD1	USP32	17	17	-1	-1	2	4	4	0.051	57970058	58270291	tier2	5UTR-CDS	18938	NA	0
LUAD	TCGA-05-4427-01A	TCGA-05-4427	TUBD1\|VMP1	TUBD1	VMP1	17	17	-1	1	3	99	91	0.19	57941025	57816198	tier1	Out-of-frame	18940	NA	0
BRCA	TCGA-C8-A273-01A	TCGA-C8-A273	RPS6KB1\|TUBD1	RPS6KB1	TUBD1	17	17	1	-1	19	21	19	0.14	57970686	57955695	tier1	In-frame	15062	NA	0
LUSC	TCGA-85-8580-01A	TCGA-85-8580	RPS6KB1\|FKBP10	RPS6KB1	FKBP10	17	17	1	1	7	1	1	1.8	57970686	39974341	tier4	Out-of-frame	15059	NA	0
BLCA	TCGA-4Z-AA7Q-01A	TCGA-4Z-AA7Q	RPS6KB1\|VMP1	RPS6KB1	VMP1	17	17	1	1	121	103	96	1.4	57992064	57917129	tier1	In-frame	15066	NA	0
BLCA	TCGA-HQ-A2OE-01A	TCGA-HQ-A2OE	RPS6KB1\|VMP1	RPS6KB1	VMP1	17	17	1	1	27	43	42	1.4	57970686	57886157	tier1	In-frame	15086	NA	0
BLCA	TCGA-PQ-A6FI-01A	TCGA-PQ-A6FI	RPS6KB1\|VMP1	RPS6KB1	VMP1	17	17	1	1	140	89	82	1.4	57992064	57915656	tier2	Out-of-frame	15090	NA	0
BRCA	TCGA-AN-A0FD-01A	TCGA-AN-A0FD	RPS6KB1\|EFCAB3	RPS6KB1	EFCAB3	17	17	1	1	25	25	24	1.1	57970686	60460324	tier1	CDS-5UTR	15058	NA	0
BRCA	TCGA-AQ-A04H-01B	TCGA-AQ-A04H	RPS6KB1\|RNF213	RPS6KB1	RNF213	17	17	1	1	52	43	42	1	57971285	78345674	tier1	5UTR-CDS	15060	NA	0
BRCA	TCGA-A1-A0SN-01A	TCGA-A1-A0SN	RPS6KB1\|TEX2	RPS6KB1	TEX2	17	17	1	-1	102	61	58	0.08	57990165	62291602	tier2	CDS-5UTR	15061	NA	0
BRCA	TCGA-AC-A2BK-01A	TCGA-AC-A2BK	RPS6KB1\|VMP1	RPS6KB1	VMP1	17	17	1	1	6	9	8	1.4	57987972	57886157	tier1	Out-of-frame	15076	non-validated	0
BRCA	TCGA-AC-A8OP-01A	TCGA-AC-A8OP	RPS6KB1\|VMP1	RPS6KB1	VMP1	17	17	1	1	45	33	31	1.4	57992064	57915656	tier1	Out-of-frame	15077	NA	0
BRCA	TCGA-BH-A0B9-01A	TCGA-BH-A0B9	RPS6KB1\|VMP1	RPS6KB1	VMP1	17	17	1	1	11	5	5	1.4	57992064	57915656	tier1	Out-of-frame	15079	non-validated	0
BRCA	TCGA-D8-A27H-01A	TCGA-D8-A27H	RPS6KB1\|VMP1	RPS6KB1	VMP1	17	17	1	1	10	8	7	1.4	57970686	57842332	tier1	In-frame	15083	non-validated	0
BRCA	TCGA-EW-A1PB-01A	TCGA-EW-A1PB	RPS6KB1\|VMP1	RPS6KB1	VMP1	17	17	1	1	2	2	2	1.4	57970686	57842332	tier2	In-frame	15085	non-validated	0

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