Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| CESC | TCGA-EX-A8YF-01A | TCGA-EX-A8YF | SPOCK2|ASCC1 | SPOCK2 | ASCC1 | 10 | 10 | -1 | -1 | 10 | 5 | 4 | 0.55 | 73831902 | 73857208 | tier1 | Out-of-frame | 16741 | NA | 0 |
| PRAD | TCGA-HC-7231-01A | TCGA-HC-7231 | BMPR1A|ENTPD1 | BMPR1A | ENTPD1 | 10 | 10 | 1 | 1 | 19 | 27 | 26 | 1.6 | 88659883 | 97604233 | tier1 | In-frame | 2133 | NA | 0.37735 |
| UCEC | TCGA-EY-A3L3-01A | TCGA-EY-A3L3 | BMPR1A|C10orf11 | BMPR1A | C10orf11 | 10 | 10 | 1 | 1 | 105 | 333 | 178 | 0.44 | 88659883 | 77818424 | tier1 | In-frame | 2132 | NA | 0 |
| LUSC | TCGA-90-7769-01A | TCGA-90-7769 | MINPP1|ASXL2 | MINPP1 | ASXL2 | 10 | 2 | 1 | -1 | 2 | 1 | 1 | 0.018 | 89268290 | 26068432 | tier3 | Out-of-frame | 10375 | NA | 0.35327 |
| PRAD | TCGA-HC-7744-01A | TCGA-HC-7744 | MINPP1|LIPJ | MINPP1 | LIPJ | 10 | 10 | 1 | 1 | 8 | 16 | 16 | 0.44 | 89280926 | 90365390 | tier1 | Out-of-frame | 10376 | validated | 0.34341 |
| BLCA | TCGA-FD-A62N-01A | TCGA-FD-A62N | LIPA|TMEM132A | LIPA | TMEM132A | 10 | 11 | -1 | 1 | 16 | 5 | 4 | 1.4 | 91005433 | 60694676 | tier1 | In-frame | 9364 | NA | 0.36121 |
| BRCA | TCGA-BH-A1EY-01A | TCGA-BH-A1EY | TNKS2|RP11-451M19.3 | TNKS2 | RP11-451M19.3 | 10 | 10 | 1 | -1 | 110 | 95 | 89 | 0.81 | 93614883 | 111713649 | tier1 | CDS-5UTR | 18359 | NA | 0 |
| PRAD | TCGA-YL-A9WH-01A | TCGA-YL-A9WH | TNKS2|HECTD2 | TNKS2 | HECTD2 | 10 | 10 | 1 | 1 | 9 | 7 | 7 | 1.1 | 93602148 | 93220184 | tier1 | In-frame | 18358 | NA | 0 |
| SKCM | TCGA-FS-A1Z4-06A | TCGA-FS-A1Z4 | MAP3K8|LYZL2 | MAP3K8 | LYZL2 | 10 | 10 | 1 | -1 | 80 | 54 | 49 | 1.1 | 30748430 | 30900953 | tier1 | Out-of-frame | 9884 | NA | 0.38072 |
| LUAD | TCGA-55-1596-01A | TCGA-55-1596 | MAP3K8|HEATR7B2 | MAP3K8 | HEATR7B2 | 10 | 5 | 1 | -1 | 21 | 16 | 13 | 0.048 | 30723307 | 41019120 | tier1 | 5UTR-CDS | 9883 | non-validated | 0.38072 |
| BRCA | TCGA-A2-A1FW-01A | TCGA-A2-A1FW | GLRX3|C10orf11 | GLRX3 | C10orf11 | 10 | 10 | 1 | 1 | 2 | 5 | 4 | 100 | 131973353 | 78084159 | tier2 | In-frame | 7119 | NA | 0 |
| ESCA | TCGA-L5-A43E-01A | TCGA-L5-A43E | GLRX3|SGMS1 | GLRX3 | SGMS1 | 10 | 10 | 1 | -1 | 4 | 19 | 18 | 2.1 | 131934776 | 52279681 | tier1 | CDS-5UTR | 7120 | NA | 0.36433 |
| SARC | TCGA-WP-A9GB-01A | TCGA-WP-A9GB | XPNPEP1|FAM13B | XPNPEP1 | FAM13B | 10 | 5 | -1 | -1 | 4 | 8 | 8 | 6 | 111674769 | 137298158 | tier1 | Out-of-frame | 19956 | validated | 0 |
| BLCA | TCGA-UY-A9PE-01A | TCGA-UY-A9PE | PPIF|SNX31 | PPIF | SNX31 | 10 | 8 | 1 | -1 | 36 | 14 | 14 | 100 | 81111339 | 101648239 | tier1 | Out-of-frame | 13292 | NA | 0.35094 |
| BRCA | TCGA-AN-A0AJ-01A | TCGA-AN-A0AJ | PPIF|REEP3 | PPIF | REEP3 | 10 | 10 | 1 | 1 | 200 | 314 | 294 | 0.41 | 81107499 | 65354538 | tier1 | In-frame | 13291 | NA | 0.34891 |
| LIHC | TCGA-ZS-A9CF-01A | TCGA-ZS-A9CF | CYP2C18|HELLS | CYP2C18 | HELLS | 10 | 10 | 1 | 1 | 19 | 16 | 15 | 0.01 | 96466717 | 96331145 | tier1 | In-frame | 4498 | NA | 0.35359 |
| BRCA | TCGA-EW-A1J1-01A | TCGA-EW-A1J1 | MTMR4|INSR | MTMR4 | INSR | 17 | 19 | -1 | -1 | 2 | 1 | 1 | 0.54 | 56581105 | 7267907 | tier2 | Out-of-frame | 10830 | NA | 0.39117 |
| LUAD | TCGA-69-7978-01A | TCGA-69-7978 | TUBD1|RPS6KB1 | TUBD1 | RPS6KB1 | 17 | 17 | -1 | 1 | 5 | 25 | 23 | 0.14 | 57970058 | 57987923 | tier1 | 5UTR-CDS | 18935 | NA | 0 |
| BRCA | TCGA-A1-A0SN-01A | TCGA-A1-A0SN | TUBD1|CDK12 | TUBD1 | CDK12 | 17 | 17 | -1 | 1 | 117 | 47 | 46 | 0.73 | 57943970 | 37667782 | tier2 | Out-of-frame | 18932 | NA | 0 |
| HNSC | TCGA-BB-4217-01A | TCGA-BB-4217 | TUBD1|INPP5D | TUBD1 | INPP5D | 17 | 2 | -1 | 1 | 5 | 6 | 5 | 1.5 | 57963444 | 234091056 | tier1 | Out-of-frame | 18934 | NA | 0 |
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