Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUAD | TCGA-64-1679-01A | TCGA-64-1679 | AEBP1|ANKS1A | AEBP1 | ANKS1A | 7 | 6 | 1 | 1 | 2 | 4 | 3 | 0.076 | 44154159 | 34977682 | tier4 | NA | 556 | NA | 0.37851 |
| LUAD | TCGA-55-6982-01A | TCGA-55-6982 | AEBP1|NDUFV1 | AEBP1 | NDUFV1 | 7 | 11 | 1 | 1 | 2 | 4 | 2 | 0.23 | 44154159 | 67375697 | tier3 | NA | 557 | non-validated | 0.36302 |
| LUAD | TCGA-38-4630-01A | TCGA-38-4630 | EIF4H|ELN | EIF4H | ELN | 7 | 7 | 1 | 1 | 68 | 174 | 166 | 0.36 | 73604636 | 73449694 | tier1 | In-frame | 5483 | non-validated | 0.36049 |
| ACC | TCGA-OR-A5J8-01A | TCGA-OR-A5J8 | EIF4H|AARS2 | EIF4H | AARS2 | 7 | 6 | 1 | -1 | 140 | 188 | 172 | 4.5 | 73588772 | 44280000 | tier1 | Out-of-frame | 5482 | NA | 0.35137 |
| SARC | TCGA-X6-A8C6-01A | TCGA-X6-A8C6 | LIMK1|GNAT3 | LIMK1 | GNAT3 | 7 | 7 | 1 | -1 | 4 | 7 | 7 | 0.14 | 73530288 | 80123963 | tier1 | In-frame | 9348 | NA | 0.38492 |
| LUSC | TCGA-NC-A5HJ-01A | TCGA-NC-A5HJ | SLC1A1|SMARCA2 | SLC1A1 | SMARCA2 | 9 | 9 | 1 | 1 | 10 | 9 | 8 | 0.005 | 4490770 | 2096657 | tier1 | Out-of-frame | 16043 | NA | 0 |
| STAD | TCGA-FP-A8CX-01A | TCGA-FP-A8CX | FKTN|ULK4 | FKTN | ULK4 | 9 | 3 | 1 | -1 | 2 | 6 | 5 | 1.2 | 108358938 | 41795980 | tier3 | In-frame | 6558 | NA | 0.35822 |
| KIRC | TCGA-B8-A8YJ-01A | TCGA-B8-A8YJ | SPIN1|DAPK1 | SPIN1 | DAPK1 | 9 | 9 | 1 | 1 | 2 | 1 | 1 | 0.96 | 91003453 | 90283512 | tier3 | 5UTR-CDS | 16726 | NA | 0 |
| LIHC | TCGA-RC-A6M3-01A | TCGA-RC-A6M3 | TGFBR1|COL15A1 | TGFBR1 | COL15A1 | 9 | 9 | 1 | 1 | 21 | 20 | 20 | 1.3 | 101910066 | 101777699 | tier1 | In-frame | 17739 | NA | 0 |
| PRAD | TCGA-XQ-A8TA-01A | TCGA-XQ-A8TA | C5|SEMA4D | C5 | SEMA4D | 9 | 9 | -1 | -1 | 7 | 3 | 3 | 1.1 | 123837032 | 92070868 | tier1 | NA | 2732 | NA | 0.36636 |
| PRAD | TCGA-HC-7821-01A | TCGA-HC-7821 | C5|DBC1 | C5 | DBC1 | 9 | 9 | -1 | -1 | 7 | 2 | 2 | 0.62 | 123794391 | 121930502 | tier1 | Out-of-frame | 2731 | NA | 0.35298 |
| LUAD | TCGA-55-A48Y-01A | TCGA-55-A48Y | PTGR1|C9orf84 | PTGR1 | C9orf84 | 9 | 9 | -1 | -1 | 12 | 25 | 25 | 0.41 | 114355206 | 114456642 | tier1 | Out-of-frame | 13772 | NA | 0 |
| LIHC | TCGA-DD-A115-01A | TCGA-DD-A115 | AMBP|TYK2 | AMBP | TYK2 | 9 | 19 | -1 | -1 | 2 | 11 | 6 | 0.22 | 116822407 | 10491352 | tier2 | 3UTR-5UTR | 855 | NA | 0.38179 |
| LIHC | TCGA-DD-AADP-01A | TCGA-DD-AADP | AMBP|SEC63 | AMBP | SEC63 | 9 | 6 | -1 | -1 | 2 | 7 | 4 | 1.1 | 116822407 | 108214782 | tier3 | NA | 854 | NA | 0.36962 |
| BRCA | TCGA-B6-A0I6-01A | TCGA-B6-A0I6 | ENG|AK1 | ENG | AK1 | 9 | 9 | -1 | -1 | 45 | 30 | 28 | 0.86 | 130605373 | 130630791 | tier4 | In-frame | 5584 | non-validated | 0.36678 |
| LGG | TCGA-CS-6665-01A | TCGA-CS-6665 | PTGDS|EEA1 | PTGDS | EEA1 | 9 | 12 | 1 | -1 | 2 | 33 | 9 | 0.092 | 139876193 | 93229203 | tier3 | NA | 13761 | non-validated | 0.37521 |
| LGG | TCGA-E1-5304-01A | TCGA-E1-5304 | ABCA2|TRIM14 | ABCA2 | TRIM14 | 9 | 9 | -1 | -1 | 25 | 24 | 19 | 1.3 | 139922527 | 100862446 | tier1 | In-frame | 41 | NA | 0.36054 |
| BRCA | TCGA-A2-A0EV-01A | TCGA-A2-A0EV | MAPK8|KIRREL2 | MAPK8 | KIRREL2 | 10 | 19 | 1 | 1 | 3 | 2 | 2 | 0.18 | 49534008 | 36355550 | tier1 | NA | 9951 | NA | 0.38836 |
| CESC | TCGA-C5-A2LT-01A | TCGA-C5-A2LT | MAPK8|ARFIP1 | MAPK8 | ARFIP1 | 10 | 4 | 1 | 1 | 19 | 10 | 10 | 0.71 | 49514864 | 153750777 | tier1 | 5UTR-5UTR | 9949 | non-validated | 0.38851 |
| LUAD | TCGA-05-4244-01A | TCGA-05-4244 | MAPK8|C10orf53 | MAPK8 | C10orf53 | 10 | 10 | 1 | 1 | 2 | 1 | 1 | 1.7 | 49613024 | 50901820 | tier3 | Out-of-frame | 9950 | NA | 0 |
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