Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SKCM | TCGA-FS-A4F4-06A | TCGA-FS-A4F4 | PTPRZ1|SRRM3 | PTPRZ1 | SRRM3 | 7 | 7 | 1 | 1 | 3 | 1 | 1 | 0.087 | 121568275 | 75864346 | tier2 | CDS-5UTR | 13930 | NA | 0 |
| STAD | TCGA-D7-8576-01A | TCGA-D7-8576 | PTPRZ1|MDFIC | PTPRZ1 | MDFIC | 7 | 7 | 1 | 1 | 2 | 4 | 2 | 0.38 | 121608184 | 114582330 | tier2 | In-frame | 13927 | NA | 0 |
| LUAD | TCGA-49-AAR9-01A | TCGA-49-AAR9 | EZH2|TMEM176B | EZH2 | TMEM176B | 7 | 7 | -1 | -1 | 2 | 4 | 4 | 0.74 | 148581256 | 150493662 | tier2 | 5UTR-5UTR | 5963 | NA | 0.37303 |
| LUSC | TCGA-34-5928-01A | TCGA-34-5928 | EZH2|AUTS2 | EZH2 | AUTS2 | 7 | 7 | -1 | 1 | 37 | 11 | 11 | 0.58 | 148543562 | 70227856 | tier1 | Out-of-frame | 5962 | NA | 0.3734 |
| LUAD | TCGA-NJ-A55O-01A | TCGA-NJ-A55O | AGR2|EIF2AK2 | AGR2 | EIF2AK2 | 7 | 2 | -1 | -1 | 2 | 111 | 94 | 0.63 | 16832266 | 37342384 | tier4 | NA | 669 | NA | 0.38482 |
| CESC | TCGA-IR-A3LB-01A | TCGA-IR-A3LB | AGR2|ANXA1 | AGR2 | ANXA1 | 7 | 9 | -1 | 1 | 2 | 104 | 87 | 0.48 | 16832266 | 75772570 | tier3 | 3UTR-5UTR | 668 | NA | 0.37717 |
| BRCA | TCGA-B6-A0RV-01A | TCGA-B6-A0RV | AGR2|ANKS1A | AGR2 | ANKS1A | 7 | 6 | -1 | 1 | 2 | 8 | 8 | 1.4 | 16832266 | 34977682 | tier4 | NA | 667 | NA | 0.37617 |
| BRCA | TCGA-AN-A0FY-01A | TCGA-AN-A0FY | AHR|CDK14 | AHR | CDK14 | 7 | 7 | 1 | 1 | 4 | 2 | 2 | 0.33 | 17338953 | 90741857 | tier1 | In-frame | 699 | NA | 0.36684 |
| BLCA | TCGA-XF-A9T0-01A | TCGA-XF-A9T0 | AHR|TSPAN13 | AHR | TSPAN13 | 7 | 7 | 1 | 1 | 76 | 50 | 44 | 0.003 | 17338953 | 16815836 | tier1 | Out-of-frame | 701 | NA | 0.36974 |
| SKCM | TCGA-FS-A1ZZ-06A | TCGA-FS-A1ZZ | AHR|CUL4B | AHR | CUL4B | 7 | X | 1 | -1 | 14 | 9 | 9 | 0.31 | 17338953 | 119708485 | tier1 | CDS-5UTR | 700 | NA | 0.37426 |
| BRCA | TCGA-AO-A12E-01A | TCGA-AO-A12E | PRKAG2|MLL3 | PRKAG2 | MLL3 | 7 | 7 | -1 | -1 | 2 | 5 | 5 | 2 | 151329155 | 151834009 | tier2 | Out-of-frame | 13526 | NA | 0.37011 |
| PRAD | TCGA-EJ-A46G-01A | TCGA-EJ-A46G | PRKAG2|MLL3 | PRKAG2 | MLL3 | 7 | 7 | -1 | -1 | 4 | 1 | 1 | 2 | 151372506 | 151860911 | tier3 | In-frame | 13527 | NA | 0.37011 |
| PRAD | TCGA-ZG-A9KY-01A | TCGA-ZG-A9KY | PRKAG2|MLL3 | PRKAG2 | MLL3 | 7 | 7 | -1 | -1 | 3 | 3 | 3 | 2 | 151292431 | 151877211 | tier1 | In-frame | 13528 | NA | 0.37011 |
| LUAD | TCGA-97-A4M1-01A | TCGA-97-A4M1 | PRKAG2|ADCK2 | PRKAG2 | ADCK2 | 7 | 7 | -1 | 1 | 3 | 4 | 1 | 0.28 | 151573592 | 140374411 | tier2 | In-frame | 13523 | NA | 0.35368 |
| BRCA | TCGA-AN-A0XU-01A | TCGA-AN-A0XU | PRKAG2|CA10 | PRKAG2 | CA10 | 7 | 17 | -1 | -1 | 2 | 7 | 7 | 0.39 | 151329155 | 50149753 | tier2 | In-frame | 13524 | NA | 0.35409 |
| BRCA | TCGA-B6-A2IU-01A | TCGA-B6-A2IU | PRKAG2|CCDC132 | PRKAG2 | CCDC132 | 7 | 7 | -1 | 1 | 10 | 13 | 13 | 0.42 | 151573592 | 92970739 | tier1 | In-frame | 13525 | NA | 0.35579 |
| LIHC | TCGA-2Y-A9HA-01A | TCGA-2Y-A9HA | PRKAG2|ACTR3C | PRKAG2 | ACTR3C | 7 | 7 | -1 | -1 | 2 | 1 | 1 | 2.3 | 151372506 | 149946143 | tier2 | In-frame | 13522 | NA | 0.35209 |
| MESO | TCGA-UT-A88C-01B | TCGA-UT-A88C | PRKAG2|WASL | PRKAG2 | WASL | 7 | 7 | -1 | -1 | 40 | 24 | 24 | 0.003 | 151292431 | 123349277 | tier1 | In-frame | 13530 | NA | 0.37666 |
| OV | TCGA-13-0760-01A | TCGA-13-0760 | PRKAG2|ORC5 | PRKAG2 | ORC5 | 7 | 7 | -1 | -1 | 3 | 3 | 3 | 0.83 | 151329155 | 103808973 | tier1 | Out-of-frame | 13529 | NA | 0.35209 |
| SARC | TCGA-K1-A6RV-01A | TCGA-K1-A6RV | AEBP1|SLC38A5 | AEBP1 | SLC38A5 | 7 | X | 1 | -1 | 2 | 13 | 13 | 0.009 | 44154161 | 48327824 | tier3 | 3UTR-5UTR | 558 | NA | 0.36139 |
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