Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| THCA | TCGA-FK-A3S3-01A | TCGA-FK-A3S3 | MET|TFG | MET | TFG | 7 | 3 | 1 | 1 | 1204 | 727 | 646 | 1.6 | 116412043 | 100455420 | tier1 | In-frame | 10259 | validated | 0.38121 |
| UCEC | TCGA-B5-A0JN-01A | TCGA-B5-A0JN | MET|CAV1 | MET | CAV1 | 7 | 7 | 1 | 1 | 22 | 31 | 27 | 0.18 | 116381079 | 116199000 | tier1 | In-frame | 10255 | validated | 0.38279 |
| LGG | TCGA-HT-A61C-01A | TCGA-HT-A61C | WNT2|ASZ1 | WNT2 | ASZ1 | 7 | 7 | -1 | -1 | 181 | 83 | 73 | 0.67 | 116962961 | 117066989 | tier1 | Out-of-frame | 19900 | NA | 0 |
| CESC | TCGA-EK-A2PM-01A | TCGA-EK-A2PM | HSPB1|PLAT | HSPB1 | PLAT | 7 | 8 | 1 | -1 | 2 | 24 | 4 | 1.1 | 75933612 | 42051245 | tier3 | NA | 8002 | NA | 0.37726 |
| KICH | TCGA-KM-8442-01A | TCGA-KM-8442 | HSPB1|TYK2 | HSPB1 | TYK2 | 7 | 19 | 1 | -1 | 2 | 35 | 5 | 0.04 | 75933612 | 10491352 | tier3 | 3UTR-5UTR | 8007 | non-validated | 0.37601 |
| PRAD | TCGA-XA-A8JR-01A | TCGA-XA-A8JR | HSPB1|CAMKK2 | HSPB1 | CAMKK2 | 7 | 12 | 1 | -1 | 2 | 5 | 3 | 0.051 | 75933612 | 121682418 | tier4 | 3UTR-CDS | 7998 | NA | 0.37584 |
| HNSC | TCGA-HD-8224-01A | TCGA-HD-8224 | HSPB1|TTN | HSPB1 | TTN | 7 | 2 | 1 | -1 | 2 | 1 | 1 | 3.2 | 75933609 | 179537430 | tier4 | 3UTR-CDS | 8006 | NA | 0.37942 |
| CESC | TCGA-VS-A958-01A | TCGA-VS-A958 | HSPB1|STAT6 | HSPB1 | STAT6 | 7 | 12 | 1 | -1 | 2 | 9 | 1 | 0.13 | 75933612 | 57496773 | tier4 | NA | 8004 | NA | 0.37454 |
| HNSC | TCGA-HD-7753-01A | TCGA-HD-7753 | HSPB1|THSD4 | HSPB1 | THSD4 | 7 | 15 | 1 | 1 | 2 | 6 | 3 | 0.29 | 75933612 | 72072881 | tier3 | 3UTR-CDS | 8005 | non-validated | 0.36673 |
| BRCA | TCGA-AC-A5XU-01A | TCGA-AC-A5XU | HSPB1|AC011333.1 | HSPB1 | AC011333.1 | 7 | 5 | 1 | 1 | 2 | 79 | 31 | 0.95 | 75933612 | 173473096 | tier3 | NA | 7997 | NA | 0.36085 |
| CESC | TCGA-DS-A1OB-01A | TCGA-DS-A1OB | HSPB1|CLDN7 | HSPB1 | CLDN7 | 7 | 17 | 1 | -1 | 2 | 86 | 1 | 0.78 | 75933609 | 7166264 | tier3 | 3UTR-5UTR | 7999 | NA | 0.36542 |
| CESC | TCGA-EK-A2RC-01A | TCGA-EK-A2RC | HSPB1|DDX27 | HSPB1 | DDX27 | 7 | 20 | 1 | 1 | 2 | 110 | 32 | 0.084 | 75933612 | 47849303 | tier4 | NA | 8000 | NA | 0.37007 |
| HNSC | TCGA-CV-6960-01A | TCGA-CV-6960 | HSPB1|MYO1B | HSPB1 | MYO1B | 7 | 2 | 1 | 1 | 2 | 33 | 8 | 0.16 | 75933609 | 192275792 | tier4 | 3UTR-CDS | 8001 | NA | 0.36908 |
| LUSC | TCGA-98-A53I-01A | TCGA-98-A53I | HSPB1|SF3B2 | HSPB1 | SF3B2 | 7 | 11 | 1 | 1 | 2 | 21 | 21 | 0.36 | 75933612 | 65836145 | tier4 | 3UTR-CDS | 8003 | NA | 0.36986 |
| LGG | TCGA-DH-5144-01A | TCGA-DH-5144 | PTPRZ1|FYN | PTPRZ1 | FYN | 7 | 6 | 1 | -1 | 2 | 91 | 79 | 0.3 | 121684622 | 112062296 | tier3 | NA | 13926 | NA | 0 |
| GBM | TCGA-06-5417-01A | TCGA-06-5417 | PTPRZ1|MET | PTPRZ1 | MET | 7 | 7 | 1 | 1 | 2 | 2 | 2 | 0.16 | 121513611 | 116339125 | tier4 | CDS-5UTR | 13928 | NA | 0 |
| LGG | TCGA-DU-6407-02B | TCGA-DU-6407 | PTPRZ1|MET | PTPRZ1 | MET | 7 | 7 | 1 | 1 | 596 | 374 | 321 | 0.16 | 121513611 | 116339125 | tier1 | CDS-5UTR | 13929 | validated | 0 |
| BRCA | TCGA-AC-A8OQ-01A | TCGA-AC-A8OQ | PTPRZ1|UBE2H | PTPRZ1 | UBE2H | 7 | 7 | 1 | -1 | 2 | 3 | 3 | 1.5 | 121668697 | 129479175 | tier2 | In-frame | 13932 | NA | 0 |
| HNSC | TCGA-CV-5434-01A | TCGA-CV-5434 | PTPRZ1|TSPAN33 | PTPRZ1 | TSPAN33 | 7 | 7 | 1 | 1 | 58 | 40 | 32 | 0.55 | 121695141 | 128801520 | tier1 | In-frame | 13931 | NA | 0 |
| SKCM | TCGA-EE-A20I-06A | TCGA-EE-A20I | PTPRZ1|DOCK4 | PTPRZ1 | DOCK4 | 7 | 7 | 1 | -1 | 4 | 2 | 2 | 0.67 | 121624171 | 111644186 | tier1 | In-frame | 13925 | NA | 0 |
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