Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| UCEC | TCGA-AJ-A2QM-01A | TCGA-AJ-A2QM | KCNN1|GATA6 | KCNN1 | GATA6 | 19 | 18 | 1 | 1 | 22 | 14 | 13 | 1.2 | 18085996 | 19780619 | tier1 | In-frame | 8594 | NA | 0.37129 |
| COAD | TCGA-D5-6541-01A | TCGA-D5-6541 | PDE4C|KIAA1683 | PDE4C | KIAA1683 | 19 | 19 | -1 | -1 | 30 | 30 | 29 | 0.24 | 18343760 | 18368916 | tier1 | 5UTR-CDS | 12474 | NA | 0.36418 |
| GBM | TCGA-14-1034-01A | TCGA-14-1034 | FKBP8|SLC1A6 | FKBP8 | SLC1A6 | 19 | 19 | -1 | -1 | 57 | 146 | 132 | 0.39 | 18644080 | 15061202 | tier1 | Out-of-frame | 6556 | non-validated | 0.37847 |
| OV | TCGA-13-0800-01A | TCGA-13-0800 | FKBP8|DAND5 | FKBP8 | DAND5 | 19 | 19 | -1 | 1 | 11 | 33 | 32 | 0.38 | 18654296 | 13084203 | tier1 | 5UTR-CDS | 6554 | NA | 0.37775 |
| ACC | TCGA-OR-A5KX-01A | TCGA-OR-A5KX | FKBP8|HAUS8 | FKBP8 | HAUS8 | 19 | 19 | -1 | -1 | 7 | 7 | 4 | 1.1 | 18652489 | 17184145 | tier1 | Out-of-frame | 6555 | NA | 0.37603 |
| BRCA | TCGA-B6-A0RT-01A | TCGA-B6-A0RT | HPN|PPP2R5C | HPN | PPP2R5C | 19 | 14 | 1 | 1 | 12 | 8 | 7 | 1.3 | 35533426 | 102302506 | tier1 | Out-of-frame | 7950 | non-validated | 0.37072 |
| LIHC | TCGA-2V-A95S-01A | TCGA-2V-A95S | GSK3A|CNFN | GSK3A | CNFN | 19 | 19 | -1 | -1 | 18 | 18 | 16 | 0.78 | 42736209 | 42893191 | tier1 | CDS-5UTR | 7479 | NA | 0.37782 |
| PRAD | TCGA-KK-A8IH-01A | TCGA-KK-A8IH | GSK3A|ZNF564 | GSK3A | ZNF564 | 19 | 19 | -1 | -1 | 5 | 3 | 1 | 1.3 | 42744107 | 12639510 | tier2 | In-frame | 7480 | NA | 0.38392 |
| BLCA | TCGA-G2-A2EF-01A | TCGA-G2-A2EF | CDK6|HEPACAM2 | CDK6 | HEPACAM2 | 7 | 7 | -1 | -1 | 137 | 92 | 86 | 0.073 | 92404010 | 92821676 | tier1 | In-frame | 3436 | NA | 0.38073 |
| LUAD | TCGA-44-7670-01A | TCGA-44-7670 | CDK6|STXBP6 | CDK6 | STXBP6 | 7 | 14 | -1 | -1 | 17 | 12 | 10 | 0.49 | 92462405 | 25281938 | tier1 | Out-of-frame | 3437 | NA | 0.38188 |
| PAAD | TCGA-IB-A5SO-01A | TCGA-IB-A5SO | CDK6|ANKIB1 | CDK6 | ANKIB1 | 7 | 7 | -1 | 1 | 2 | 1 | 1 | 0.72 | 92404010 | 91924203 | tier2 | CDS-5UTR | 3434 | NA | 0.38499 |
| STAD | TCGA-RD-A8N6-01A | TCGA-RD-A8N6 | CDK6|ANKIB1 | CDK6 | ANKIB1 | 7 | 7 | -1 | 1 | 13 | 86 | 79 | 0.72 | 92462405 | 91936673 | tier4 | In-frame | 3435 | NA | 0.38499 |
| PRAD | TCGA-FC-7708-01A | TCGA-FC-7708 | PMPCB|PRKAR2B | PMPCB | PRKAR2B | 7 | 7 | 1 | 1 | 21 | 16 | 13 | 0.33 | 102952578 | 106762397 | tier1 | In-frame | 13112 | NA | 0.36452 |
| STAD | TCGA-VQ-A928-01A | TCGA-VQ-A928 | PMPCB|WWOX | PMPCB | WWOX | 7 | 16 | 1 | 1 | 2 | 16 | 13 | 100 | 102939155 | 79245505 | tier3 | Out-of-frame | 13113 | NA | 0.37538 |
| UCS | TCGA-N8-A56S-01A | TCGA-N8-A56S | ATP6V0A4|TM4SF20 | ATP6V0A4 | TM4SF20 | 7 | 2 | -1 | -1 | 3 | 5 | 5 | 0.073 | 138406642 | 228235696 | tier1 | In-frame | 1750 | NA | 0.35165 |
| LUAD | TCGA-44-7662-01A | TCGA-44-7662 | MET|WNT2 | MET | WNT2 | 7 | 7 | 1 | -1 | 288 | 281 | 267 | 0.69 | 116417523 | 116937930 | tier1 | Out-of-frame | 10260 | NA | 0.37772 |
| BRCA | TCGA-B6-A0I6-01A | TCGA-B6-A0I6 | MET|CAV1 | MET | CAV1 | 7 | 7 | 1 | 1 | 20 | 8 | 8 | 0.18 | 116312631 | 116199000 | tier1 | 5UTR-CDS | 10256 | non-validated | 0.38279 |
| BRCA | TCGA-AR-A1AO-01A | TCGA-AR-A1AO | MET|DYNC1I1 | MET | DYNC1I1 | 7 | 7 | 1 | 1 | 4 | 8 | 8 | 2.4 | 116371913 | 95434033 | tier1 | CDS-5UTR | 10258 | NA | 0.38038 |
| KIRP | TCGA-GL-7773-01A | TCGA-GL-7773 | MET|C8orf34 | MET | C8orf34 | 7 | 8 | 1 | 1 | 73 | 72 | 63 | 0.86 | 116412043 | 69358564 | tier1 | In-frame | 10254 | NA | 0 |
| STAD | TCGA-BR-7716-01A | TCGA-BR-7716 | MET|CAV1 | MET | CAV1 | 7 | 7 | 1 | 1 | 4 | 169 | 161 | 0.18 | 116340338 | 116199000 | tier1 | In-frame | 10257 | NA | 0.38279 |
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