Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| CESC | TCGA-EA-A410-01A | TCGA-EA-A410 | SLC1A5|UBTF | SLC1A5 | UBTF | 19 | 17 | -1 | -1 | 2 | 5 | 2 | 1.8 | 47278142 | 42288699 | tier3 | NA | 16052 | NA | 0 |
| ESCA | TCGA-L5-A891-01A | TCGA-L5-A891 | PRKD2|KLHL26 | PRKD2 | KLHL26 | 19 | 19 | -1 | 1 | 14 | 65 | 56 | 1.4 | 47204056 | 18778474 | tier1 | In-frame | 13562 | validated | 0.37948 |
| BRCA | TCGA-BH-A0HX-01A | TCGA-BH-A0HX | PRKD2|CKM | PRKD2 | CKM | 19 | 19 | -1 | -1 | 5 | 8 | 8 | 0.06 | 47207426 | 45815178 | tier1 | In-frame | 13561 | NA | 0.37494 |
| SARC | TCGA-3B-A9HU-01A | TCGA-3B-A9HU | PRKD2|STRN4 | PRKD2 | STRN4 | 19 | 19 | -1 | -1 | 10 | 9 | 6 | 0.034 | 47192794 | 47242145 | tier1 | In-frame | 13564 | NA | 0.37849 |
| STAD | TCGA-HU-A4HD-01A | TCGA-HU-A4HD | PRKD2|MYH14 | PRKD2 | MYH14 | 19 | 19 | -1 | 1 | 5 | 85 | 79 | 0.073 | 47207426 | 50747499 | tier1 | In-frame | 13563 | NA | 0.37722 |
| BLCA | TCGA-FD-A3SO-01A | TCGA-FD-A3SO | TGFB1|FXYD5 | TGFB1 | FXYD5 | 19 | 19 | -1 | 1 | 28 | 20 | 14 | 100 | 41838033 | 35655059 | tier1 | Out-of-frame | 17735 | NA | 0 |
| KIRC | TCGA-BP-4761-01A | TCGA-BP-4761 | TGFB1|CCDC97 | TGFB1 | CCDC97 | 19 | 19 | -1 | 1 | 90 | 81 | 74 | 0.9 | 41847788 | 41828500 | tier1 | In-frame | 17734 | NA | 0 |
| SARC | TCGA-3B-A9HX-01A | TCGA-3B-A9HX | TGFB1|CCDC97 | TGFB1 | CCDC97 | 19 | 19 | -1 | 1 | 14 | 8 | 8 | 0.9 | 41838033 | 41822289 | tier1 | Out-of-frame | 17733 | NA | 0 |
| BRCA | TCGA-A2-A0D0-01A | TCGA-A2-A0D0 | TYK2|CDC37 | TYK2 | CDC37 | 19 | 19 | -1 | -1 | 82 | 34 | 29 | 0.9 | 10488890 | 10504117 | tier1 | Out-of-frame | 18998 | non-validated | 0 |
| BRCA | TCGA-BH-A0BP-01A | TCGA-BH-A0BP | TYK2|SHC2 | TYK2 | SHC2 | 19 | 19 | -1 | -1 | 8 | 3 | 3 | 4.7 | 10468440 | 430747 | tier1 | In-frame | 18999 | NA | 0 |
| ESCA | TCGA-VR-A8Q7-01A | TCGA-VR-A8Q7 | TYK2|TMEM205 | TYK2 | TMEM205 | 19 | 19 | -1 | -1 | 5 | 165 | 147 | 0.69 | 10490291 | 11456304 | tier1 | 5UTR-5UTR | 19001 | NA | 0 |
| UCS | TCGA-N9-A4Q7-01A | TCGA-N9-A4Q7 | TYK2|SYMPK | TYK2 | SYMPK | 19 | 19 | -1 | -1 | 7 | 7 | 5 | 0.19 | 10467244 | 46347458 | tier4 | In-frame | 19000 | NA | 0 |
| SARC | TCGA-FX-A3NK-01A | TCGA-FX-A3NK | PTPRS|ANGPTL4 | PTPRS | ANGPTL4 | 19 | 19 | -1 | 1 | 252 | 23 | 21 | 1.7 | 5286061 | 8430838 | tier1 | Out-of-frame | 13915 | NA | 0 |
| ESCA | TCGA-L5-A891-01A | TCGA-L5-A891 | PTPRS|MBD3 | PTPRS | MBD3 | 19 | 19 | -1 | -1 | 3 | 15 | 13 | 0.19 | 5211601 | 1582711 | tier1 | Out-of-frame | 13916 | validated | 0 |
| LGG | TCGA-P5-A5EU-01A | TCGA-P5-A5EU | PTPRS|POU2F2 | PTPRS | POU2F2 | 19 | 19 | -1 | -1 | 2 | 1 | 1 | 0.35 | 5340675 | 42626728 | tier2 | 5UTR-CDS | 13917 | NA | 0 |
| SARC | TCGA-DX-A6Z0-01A | TCGA-DX-A6Z0 | PTPRS|ZNF627 | PTPRS | ZNF627 | 19 | 19 | -1 | 1 | 10 | 14 | 11 | 2.6 | 5274210 | 11725342 | tier2 | In-frame | 13919 | NA | 0 |
| SKCM | TCGA-EE-A2GU-06A | TCGA-EE-A2GU | PTPRS|TMEM8A | PTPRS | TMEM8A | 19 | 16 | -1 | -1 | 14 | 22 | 19 | 0.079 | 5340675 | 434396 | tier1 | NA | 13918 | NA | 0 |
| BRCA | TCGA-A8-A097-01A | TCGA-A8-A097 | CARD8|BCKDHA | CARD8 | BCKDHA | 19 | 19 | -1 | 1 | 25 | 12 | 11 | 0.11 | 48744219 | 41916542 | tier1 | Out-of-frame | 2991 | NA | 0.35342 |
| SKCM | TCGA-D3-A3CC-06A | TCGA-D3-A3CC | LIG1|AC008687.1 | LIG1 | AC008687.1 | 19 | 19 | -1 | -1 | 7 | 1 | 1 | 0.021 | 48664629 | 49567119 | tier2 | CDS-5UTR | 9330 | NA | 0.35503 |
| OV | TCGA-25-1329-01A | TCGA-25-1329 | KCNN1|SLC27A1 | KCNN1 | SLC27A1 | 19 | 19 | 1 | 1 | 5 | 1 | 1 | 0.027 | 18100652 | 17597372 | tier2 | NA | 8595 | NA | 0.34929 |
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