TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
BRCA	TCGA-D8-A140-01A	TCGA-D8-A140	OLFM2\|CEP112	OLFM2	CEP112	19	17	-1	-1	8	10	9	0.23	10046980	63685336	tier1	In-frame	12021	NA	0.35512
BRCA	TCGA-AN-A0AR-01A	TCGA-AN-A0AR	OLFM2\|TBC1D21	OLFM2	TBC1D21	19	15	-1	1	70	51	46	0.28	10046980	74173985	tier1	In-frame	12027	NA	0.35961
OV	TCGA-09-0366-01A	TCGA-09-0366	OLFM2\|TMEM205	OLFM2	TMEM205	19	19	-1	-1	54	54	43	0.085	10046980	11456304	tier2	CDS-5UTR	12028	NA	0.35859
STAD	TCGA-CD-8525-01A	TCGA-CD-8525	OLFM2\|EIF3G	OLFM2	EIF3G	19	19	-1	-1	4	38	36	0.26	10046980	10226750	tier1	Out-of-frame	12024	NA	0.36967
UCEC	TCGA-EY-A4KR-01A	TCGA-EY-A4KR	OLFM2\|EXOSC10	OLFM2	EXOSC10	19	1	-1	-1	19	18	18	2.7	10046980	11137708	tier1	In-frame	12025	NA	0.36755
UCS	TCGA-N9-A4Q3-01A	TCGA-N9-A4Q3	OLFM2\|CRTC1	OLFM2	CRTC1	19	19	-1	1	8	4	2	0.038	10046980	18853720	tier1	In-frame	12023	NA	0.36259
UCS	TCGA-N8-A56S-01A	TCGA-N8-A56S	SLC1A6\|AKAP8L	SLC1A6	AKAP8L	19	19	-1	-1	15	5	5	0.13	15075131	15491423	tier1	In-frame	16053	NA	0
SKCM	TCGA-ER-A19T-01A	TCGA-ER-A19T	FBL\|RYR1	FBL	RYR1	19	19	-1	1	49	41	41	0.63	40336931	39055599	tier1	Out-of-frame	6280	non-validated	0.37307
ESCA	TCGA-L5-A8NG-01A	TCGA-L5-A8NG	FBL\|ZNF829	FBL	ZNF829	19	19	-1	-1	2	12	12	2.5	40327196	37406153	tier4	CDS-5UTR	6282	NA	0.36955
SKCM	TCGA-EE-A20I-06A	TCGA-EE-A20I	FBL\|CTC-435M10.3	FBL	CTC-435M10.3	19	19	-1	1	6	1	1	0.28	40336931	41884186	tier3	CDS-5UTR	6278	NA	0.35934
SKCM	TCGA-ER-A19T-01A	TCGA-ER-A19T	FBL\|RASGRP4	FBL	RASGRP4	19	19	-1	-1	3	8	7	0.47	40336931	38900736	tier1	Out-of-frame	6279	non-validated	0.37304
TGCT	TCGA-XE-AANJ-01A	TCGA-XE-AANJ	FBL\|SEC63	FBL	SEC63	19	6	-1	-1	2	1	1	0.002	40325094	108214782	tier3	NA	6281	NA	0.36552
UCS	TCGA-NA-A4QV-01A	TCGA-NA-A4QV	DYRK1B\|DPF1	DYRK1B	DPF1	19	19	-1	-1	41	13	13	0.06	40324663	38713348	tier1	5UTR-CDS	5236	NA	0.38342
KIRP	TCGA-GL-6846-01A	TCGA-GL-6846	GPI\|UTRN	GPI	UTRN	19	6	1	1	2	12	12	0.58	34893318	144665237	tier3	NA	7341	NA	0.37097
LGG	TCGA-E1-A7Z2-01A	TCGA-E1-A7Z2	AKT2\|SRRM5	AKT2	SRRM5	19	19	-1	1	24	12	8	1.8	40771129	44101246	tier1	CDS-5UTR	758	NA	0.38006
LGG	TCGA-P5-A5EU-01A	TCGA-P5-A5EU	AKT2\|UPF1	AKT2	UPF1	19	19	-1	1	7	3	3	0.29	40791088	18956789	tier1	5UTR-CDS	759	NA	0.38334
SKCM	TCGA-EE-A2GL-06A	TCGA-EE-A2GL	AKT2\|ELK3	AKT2	ELK3	19	12	-1	1	2	2	1	0.79	40736224	96588323	tier3	3UTR-5UTR	757	NA	0.38647
UCEC	TCGA-BG-A3PP-01A	TCGA-BG-A3PP	AKT2\|YIF1B	AKT2	YIF1B	19	19	-1	-1	21	8	7	0.16	40791088	38800283	tier1	5UTR-CDS	760	NA	0.38146
PRAD	TCGA-CH-5743-01A	TCGA-CH-5743	SLC1A5\|STAT6	SLC1A5	STAT6	19	12	-1	-1	2	18	16	0.41	47278142	57496773	tier3	NA	16051	NA	0
CESC	TCGA-UC-A7PG-01A	TCGA-UC-A7PG	SLC1A5\|AP2A1	SLC1A5	AP2A1	19	19	-1	1	2	7	6	0.36	47285640	50285014	tier2	Out-of-frame	16049	NA	0

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