Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LUAD | TCGA-05-4418-01A | TCGA-05-4418 | RELB|IGSF23 | RELB | IGSF23 | 19 | 19 | 1 | 1 | 6 | 2 | 1 | 0.97 | 45506254 | 45127000 | tier2 | NA | 14538 | NA | 0 |
| GBM | TCGA-14-1402-02A | TCGA-14-1402 | FCGRT|BCAT2 | FCGRT | BCAT2 | 19 | 19 | 1 | -1 | 6 | 9 | 9 | 0.48 | 50017743 | 49303554 | tier1 | Out-of-frame | 6382 | non-validated | 0.35398 |
| BRCA | TCGA-OL-A66I-01A | TCGA-OL-A66I | DOT1L|EPB41L2 | DOT1L | EPB41L2 | 19 | 6 | 1 | -1 | 13 | 13 | 12 | 0.008 | 2180755 | 131277639 | tier1 | CDS-5UTR | 5062 | NA | 0.36837 |
| COAD | TCGA-AA-3511-01A | TCGA-AA-3511 | DOT1L|BTBD2 | DOT1L | BTBD2 | 19 | 19 | 1 | -1 | 13 | 16 | 15 | 0.057 | 2223485 | 1997462 | tier1 | In-frame | 5061 | NA | 0.37315 |
| KIRC | TCGA-A3-3325-01A | TCGA-A3-3325 | DOT1L|ONECUT3 | DOT1L | ONECUT3 | 19 | 19 | 1 | 1 | 6 | 5 | 5 | 0.11 | 2207679 | 1775152 | tier1 | Out-of-frame | 5064 | NA | 0.34313 |
| PRAD | TCGA-V1-A9O9-01A | TCGA-V1-A9O9 | DOT1L|LSM7 | DOT1L | LSM7 | 19 | 19 | 1 | -1 | 10 | 8 | 8 | 0.47 | 2180755 | 2328476 | tier1 | Out-of-frame | 5063 | NA | 0.34959 |
| SARC | TCGA-DX-A6B9-01A | TCGA-DX-A6B9 | DOT1L|PSG11 | DOT1L | PSG11 | 19 | 19 | 1 | -1 | 21 | 42 | 42 | 0.42 | 2164264 | 43523200 | tier1 | Out-of-frame | 5066 | NA | 0.34643 |
| SARC | TCGA-DX-A7ES-01A | TCGA-DX-A7ES | DOT1L|RP11-362K2.2 | DOT1L | RP11-362K2.2 | 19 | 12 | 1 | 1 | 103 | 9 | 9 | 1.3 | 2194576 | 59206196 | tier1 | Out-of-frame | 5067 | NA | 0.33637 |
| SARC | TCGA-K1-A3PO-01A | TCGA-K1-A3PO | DOT1L|SSBP3 | DOT1L | SSBP3 | 19 | 1 | 1 | -1 | 2 | 5 | 5 | 0.16 | 2164264 | 54694499 | tier3 | In-frame | 5068 | NA | 0.34133 |
| STAD | TCGA-R5-A7ZE-01B | TCGA-R5-A7ZE | DOT1L|PLEKHF1 | DOT1L | PLEKHF1 | 19 | 19 | 1 | 1 | 15 | 43 | 35 | 0.13 | 2164264 | 30164731 | tier1 | CDS-5UTR | 5065 | NA | 0.35745 |
| UCEC | TCGA-PG-A914-01A | TCGA-PG-A914 | DMPK|RCN3 | DMPK | RCN3 | 19 | 19 | -1 | 1 | 5 | 6 | 3 | 0.74 | 46282522 | 50037450 | tier1 | Out-of-frame | 4911 | NA | 0.37641 |
| BRCA | TCGA-A2-A3XW-01A | TCGA-A2-A3XW | IL4I1|KCNQ2 | IL4I1 | KCNQ2 | 19 | 20 | -1 | -1 | 76 | 133 | 119 | 0.022 | 50430951 | 62076717 | tier1 | 5UTR-CDS | 8196 | NA | 0.36908 |
| ESCA | TCGA-JY-A6FD-01A | TCGA-JY-A6FD | IL4I1|DYRK1B | IL4I1 | DYRK1B | 19 | 19 | -1 | -1 | 5 | 5 | 5 | 0.21 | 50430951 | 40322608 | tier1 | 5UTR-5UTR | 8195 | NA | 0.37847 |
| BLCA | TCGA-4Z-AA7M-01A | TCGA-4Z-AA7M | IL4I1|VSTM2B | IL4I1 | VSTM2B | 19 | 19 | -1 | 1 | 224 | 128 | 122 | 100 | 50430951 | 30054753 | tier1 | 5UTR-CDS | 8198 | NA | 0.34503 |
| CESC | TCGA-IR-A3LH-01A | TCGA-IR-A3LH | IL4I1|TBC1D17 | IL4I1 | TBC1D17 | 19 | 19 | -1 | 1 | 81 | 23 | 16 | 0.2 | 50430951 | 50385298 | tier1 | 5UTR-CDS | 8197 | NA | 0.35444 |
| CESC | TCGA-IR-A3LH-01A | TCGA-IR-A3LH | VRK3|TGFB1 | VRK3 | TGFB1 | 19 | 19 | -1 | -1 | 117 | 34 | 33 | 2 | 50504047 | 41838186 | tier1 | Out-of-frame | 19685 | NA | 0 |
| CESC | TCGA-C5-A907-01A | TCGA-C5-A907 | VRK3|PPP6R1 | VRK3 | PPP6R1 | 19 | 19 | -1 | -1 | 30 | 22 | 21 | 0.078 | 50504047 | 55753856 | tier1 | In-frame | 19684 | NA | 0 |
| HNSC | TCGA-CR-7388-01A | TCGA-CR-7388 | OLFM2|COL5A3 | OLFM2 | COL5A3 | 19 | 19 | -1 | -1 | 10 | 4 | 2 | 0.41 | 10046980 | 10080358 | tier1 | In-frame | 12022 | NA | 0.36926 |
| UCS | TCGA-NG-A4VU-01A | TCGA-NG-A4VU | OLFM2|CECR2 | OLFM2 | CECR2 | 19 | 22 | -1 | 1 | 2 | 1 | 1 | 0.37 | 10046980 | 17956630 | tier2 | In-frame | 12020 | NA | 0.36435 |
| STAD | TCGA-BR-7197-01A | TCGA-BR-7197 | OLFM2|PSENEN | OLFM2 | PSENEN | 19 | 19 | -1 | 1 | 3 | 8 | 6 | 0.15 | 10046980 | 36236736 | tier1 | CDS-5UTR | 12026 | NA | 0.36334 |
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