Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-E9-A5FL-01A | TCGA-E9-A5FL | STK3|POLR2K | STK3 | POLR2K | 8 | 8 | -1 | 1 | 4 | 6 | 4 | 0.38 | 99837743 | 101163575 | tier1 | CDS-5UTR | 17075 | NA | 0 |
| CESC | TCGA-MA-AA43-01A | TCGA-MA-AA43 | STK3|LRRC69 | STK3 | LRRC69 | 8 | 8 | -1 | 1 | 4 | 2 | 2 | 0.11 | 99538970 | 92212841 | tier1 | In-frame | 17073 | NA | 0 |
| ESCA | TCGA-L5-A4OT-01A | TCGA-L5-A4OT | STK3|COX6C | STK3 | COX6C | 8 | 8 | -1 | -1 | 9 | 82 | 79 | 1.1 | 99718695 | 100899846 | tier1 | In-frame | 17072 | NA | 0 |
| LUAD | TCGA-78-7153-01A | TCGA-78-7153 | STK3|ZHX2 | STK3 | ZHX2 | 8 | 8 | -1 | 1 | 2 | 3 | 2 | 0.51 | 99761504 | 123963532 | tier2 | CDS-5UTR | 17077 | NA | 0 |
| LIHC | TCGA-CC-A8HV-01A | TCGA-CC-A8HV | SQLE|RBFOX3 | SQLE | RBFOX3 | 8 | 17 | 1 | -1 | 9 | 4 | 4 | 0.088 | 126023874 | 77303906 | tier1 | CDS-5UTR | 16808 | NA | 0 |
| SARC | TCGA-KF-A41W-01A | TCGA-KF-A41W | SLC39A14|IL4I1 | SLC39A14 | IL4I1 | 8 | 19 | 1 | -1 | 8 | 11 | 10 | 0.39 | 22224921 | 50399310 | tier1 | 5UTR-CDS | 16201 | NA | 0 |
| BRCA | TCGA-D8-A1X5-01A | TCGA-D8-A1X5 | SLC39A14|PRKDC | SLC39A14 | PRKDC | 8 | 8 | 1 | -1 | 3 | 6 | 5 | 0.64 | 22224921 | 48762064 | tier1 | 5UTR-CDS | 16204 | NA | 0 |
| LIHC | TCGA-BC-A10T-01A | TCGA-BC-A10T | SLC39A14|FAM110B | SLC39A14 | FAM110B | 8 | 8 | 1 | 1 | 20 | 28 | 27 | 0.16 | 22237027 | 59058466 | tier1 | NA | 16200 | NA | 0 |
| LIHC | TCGA-ZS-A9CF-02A | TCGA-ZS-A9CF | SLC39A14|XPO7 | SLC39A14 | XPO7 | 8 | 8 | 1 | 1 | 15 | 24 | 22 | 2.8 | 22224921 | 21856266 | tier1 | 5UTR-CDS | 16205 | NA | 0 |
| LUSC | TCGA-NC-A5HL-01A | TCGA-NC-A5HL | SLC39A14|PIWIL2 | SLC39A14 | PIWIL2 | 8 | 8 | 1 | 1 | 6 | 1 | 1 | 0.24 | 22269719 | 22161534 | tier3 | Out-of-frame | 16203 | NA | 0 |
| STAD | TCGA-BR-4357-01A | TCGA-BR-4357 | SLC39A14|PIWIL2 | SLC39A14 | PIWIL2 | 8 | 8 | 1 | 1 | 6 | 3 | 3 | 0.24 | 22224921 | 22136854 | tier1 | 5UTR-5UTR | 16202 | NA | 0 |
| KIRP | TCGA-J7-8537-01A | TCGA-J7-8537 | GSR|CSMD1 | GSR | CSMD1 | 8 | 8 | -1 | -1 | 74 | 79 | 76 | 0.11 | 30541605 | 2887035 | tier1 | In-frame | 7503 | NA | 0.35155 |
| PRAD | TCGA-KK-A7AV-01A | TCGA-KK-A7AV | GSR|STMN2 | GSR | STMN2 | 8 | 8 | -1 | 1 | 4 | 7 | 7 | 0.07 | 30557598 | 80549037 | tier1 | Out-of-frame | 7504 | NA | 0.36428 |
| BLCA | TCGA-G2-A2EJ-01A | TCGA-G2-A2EJ | TNFRSF10A|EPB49 | TNFRSF10A | EPB49 | 8 | 8 | -1 | 1 | 3 | 1 | 1 | 0.93 | 23082269 | 21924216 | tier2 | CDS-5UTR | 18334 | NA | 0 |
| PRAD | TCGA-HC-7210-01A | TCGA-HC-7210 | TUSC3|LOXL2 | TUSC3 | LOXL2 | 8 | 8 | 1 | -1 | 18 | 13 | 12 | 1.6 | 15601121 | 23225947 | tier1 | CDS-5UTR | 18969 | NA | 0 |
| BRCA | TCGA-AO-A03T-01A | TCGA-AO-A03T | TUSC3|SORBS3 | TUSC3 | SORBS3 | 8 | 8 | 1 | 1 | 5 | 2 | 2 | 1.6 | 15480758 | 22421500 | tier1 | In-frame | 18970 | NA | 0 |
| UCS | TCGA-N5-A4R8-01A | TCGA-N5-A4R8 | TUSC3|HOOK3 | TUSC3 | HOOK3 | 8 | 8 | 1 | 1 | 11 | 8 | 8 | 0.4 | 15398077 | 42819454 | tier1 | In-frame | 18968 | NA | 0 |
| LUAD | TCGA-86-A4D0-01A | TCGA-86-A4D0 | ADAM2|MTMR2 | ADAM2 | MTMR2 | 8 | 11 | -1 | -1 | 6 | 1 | 1 | 0.46 | 39603991 | 95598840 | tier2 | Out-of-frame | 412 | NA | 0.35634 |
| BLCA | TCGA-ZF-A9R9-01A | TCGA-ZF-A9R9 | MAN2B1|RTBDN | MAN2B1 | RTBDN | 19 | 19 | -1 | -1 | 42 | 45 | 42 | 0.82 | 12760727 | 12937685 | tier1 | In-frame | 9818 | NA | 0.34349 |
| OV | TCGA-20-0987-01A | TCGA-20-0987 | NUCB1|FAM83E | NUCB1 | FAM83E | 19 | 19 | 1 | -1 | 14 | 13 | 12 | 0.64 | 49416821 | 49104626 | tier1 | Out-of-frame | 11853 | NA | 0.35797 |
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