Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| COAD | TCGA-AA-A02Y-01A | TCGA-AA-A02Y | OLFM4|STAT6 | OLFM4 | STAT6 | 13 | 12 | 1 | -1 | 2 | 73 | 26 | 0.42 | 53626192 | 57496773 | tier4 | NA | 12031 | non-validated | 0.3742 |
| COAD | TCGA-G4-6293-01A | TCGA-G4-6293 | OLFM4|DYNC1H1 | OLFM4 | DYNC1H1 | 13 | 14 | 1 | 1 | 2 | 1 | 1 | 1.5 | 53626192 | 102449356 | tier3 | 3UTR-CDS | 12030 | NA | 0.35992 |
| PAAD | TCGA-US-A77E-01A | TCGA-US-A77E | MSLN|CLCN3 | MSLN | CLCN3 | 16 | 4 | 1 | 1 | 2 | 6 | 3 | 1.8 | 818865 | 170623929 | tier3 | NA | 10739 | NA | 0.36337 |
| MESO | TCGA-LK-A4NZ-01A | TCGA-LK-A4NZ | MSLN|UVRAG | MSLN | UVRAG | 16 | 11 | 1 | 1 | 2 | 8 | 4 | 0.32 | 818865 | 75694431 | tier3 | 3UTR-CDS | 10740 | NA | 0.34468 |
| BLCA | TCGA-GC-A3RB-01A | TCGA-GC-A3RB | MMP15|CDH5 | MMP15 | CDH5 | 16 | 16 | 1 | 1 | 2 | 10 | 10 | 0.015 | 58060416 | 66413222 | tier2 | CDS-5UTR | 10548 | NA | 0.37867 |
| PRAD | TCGA-XJ-A9DX-01A | TCGA-XJ-A9DX | MMP15|CCDC135 | MMP15 | CCDC135 | 16 | 16 | 1 | 1 | 6 | 2 | 2 | 0.011 | 58077531 | 57759980 | tier1 | Out-of-frame | 10547 | NA | 0.35704 |
| STAD | TCGA-BR-8080-01A | TCGA-BR-8080 | MMP15|CCDC135 | MMP15 | CCDC135 | 16 | 16 | 1 | 1 | 5 | 44 | 39 | 0.011 | 58060416 | 57761211 | tier4 | In-frame | 10546 | NA | 0.35704 |
| BRCA | TCGA-AQ-A54O-01A | TCGA-AQ-A54O | SMPD3|AP1G2 | SMPD3 | AP1G2 | 16 | 14 | -1 | -1 | 2 | 1 | 1 | 0.18 | 68392230 | 24037279 | tier3 | 3UTR-5UTR | 16432 | NA | 0 |
| LUAD | TCGA-75-6214-01A | TCGA-75-6214 | SMPD3|C16orf73 | SMPD3 | C16orf73 | 16 | 16 | -1 | -1 | 4 | 1 | 1 | 4.4 | 68482256 | 1912117 | tier2 | 5UTR-CDS | 16433 | NA | 0 |
| UCEC | TCGA-BK-A139-02A | TCGA-BK-A139 | SLC7A6|PLA2G15 | SLC7A6 | PLA2G15 | 16 | 16 | 1 | 1 | 6 | 2 | 1 | 2.1 | 68300624 | 68288822 | tier3 | 5UTR-CDS | 16294 | NA | 0 |
| LUAD | TCGA-38-4629-01A | TCGA-38-4629 | SLC7A6|GRXCR1 | SLC7A6 | GRXCR1 | 16 | 4 | 1 | 1 | 2 | 2 | 1 | 0.76 | 68300624 | 43022371 | tier3 | 5UTR-CDS | 16292 | NA | 0 |
| LUAD | TCGA-93-8067-01A | TCGA-93-8067 | SLC7A6|NFATC3 | SLC7A6 | NFATC3 | 16 | 16 | 1 | 1 | 19 | 5 | 5 | 4.8 | 68309152 | 68260253 | tier1 | Out-of-frame | 16293 | NA | 0 |
| UCS | TCGA-NA-A5I1-01A | TCGA-NA-A5I1 | SLC7A6|C16orf70 | SLC7A6 | C16orf70 | 16 | 16 | 1 | 1 | 3 | 7 | 7 | 0.63 | 68300624 | 67165189 | tier1 | 5UTR-CDS | 16291 | NA | 0 |
| PRAD | TCGA-EJ-5524-01A | TCGA-EJ-5524 | MLYCD|MGRN1 | MLYCD | MGRN1 | 16 | 16 | 1 | 1 | 28 | 12 | 12 | 0.5 | 83945972 | 4718266 | tier1 | In-frame | 10537 | NA | 0.34116 |
| SKCM | TCGA-EB-A4XL-01A | TCGA-EB-A4XL | CRISPLD2|MPZL2 | CRISPLD2 | MPZL2 | 16 | 11 | 1 | -1 | 26 | 19 | 16 | 1.5 | 84922969 | 118125948 | tier1 | CDS-3UTR | 4229 | NA | 0.34548 |
| PRAD | TCGA-KK-A8I7-01A | TCGA-KK-A8I7 | ABCC1|PRKCB | ABCC1 | PRKCB | 16 | 16 | 1 | 1 | 3 | 4 | 4 | 0.044 | 16184445 | 23999829 | tier1 | In-frame | 55 | NA | 0.38354 |
| CESC | TCGA-VS-A8EC-01A | TCGA-VS-A8EC | ABCC1|NDE1 | ABCC1 | NDE1 | 16 | 16 | 1 | 1 | 3 | 3 | 2 | 0.27 | 16110478 | 15758593 | tier1 | CDS-5UTR | 54 | NA | 0.36747 |
| SKCM | TCGA-W3-AA1V-06B | TCGA-W3-AA1V | CLCN7|IFT140 | CLCN7 | IFT140 | 16 | 16 | -1 | -1 | 5 | 3 | 3 | 0.005 | 1500498 | 1614163 | tier1 | Out-of-frame | 3769 | NA | 0.35372 |
| SKCM | TCGA-GN-A26D-06A | TCGA-GN-A26D | CLCN7|SEC63 | CLCN7 | SEC63 | 16 | 6 | -1 | -1 | 2 | 3 | 2 | 0.28 | 1495345 | 108214782 | tier3 | NA | 3770 | NA | 0.35557 |
| BRCA | TCGA-BH-A0B9-01A | TCGA-BH-A0B9 | EEF2K|UQCRC2 | EEF2K | UQCRC2 | 16 | 16 | 1 | 1 | 28 | 13 | 12 | 0.14 | 22276201 | 21982846 | tier1 | Out-of-frame | 5324 | non-validated | 0.36978 |
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