TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
ESCA	TCGA-LN-A4MQ-01A	TCGA-LN-A4MQ	KLF5\|PIBF1	KLF5	PIBF1	13	13	1	1	41	457	424	0.11	73638021	73590007	tier1	Out-of-frame	9043	NA	0.37945
LUSC	TCGA-MF-A522-01A	TCGA-MF-A522	KLF5\|PIBF1	KLF5	PIBF1	13	13	1	1	2	3	2	0.11	73651676	73410241	tier3	NA	9044	NA	0.37945
BLCA	TCGA-4Z-AA87-01A	TCGA-4Z-AA87	STK24\|SLC15A1	STK24	SLC15A1	13	13	-1	-1	4	7	6	0.35	99228999	99379113	tier1	Out-of-frame	17067	NA	0
READ	TCGA-AF-5654-01A	TCGA-AF-5654	STK24\|SLC15A1	STK24	SLC15A1	13	13	-1	-1	2	7	6	0.35	99228999	99379113	tier2	Out-of-frame	17068	NA	0
STAD	TCGA-VQ-A928-01A	TCGA-VQ-A928	STK24\|SLC15A1	STK24	SLC15A1	13	13	-1	-1	2	13	12	0.35	99228999	99379113	tier4	Out-of-frame	17069	NA	0
UCEC	TCGA-KP-A3VZ-01A	TCGA-KP-A3VZ	STK24\|PDE1A	STK24	PDE1A	13	2	-1	-1	2	9	8	0.062	99228999	183387113	tier2	CDS-5UTR	17065	NA	0
BLCA	TCGA-BT-A2LA-01A	TCGA-BT-A2LA	STK24\|TMTC4	STK24	TMTC4	13	13	-1	-1	25	19	19	0.56	99228999	101258681	tier1	In-frame	17070	non-validated	0
BRCA	TCGA-A7-A13D-01B	TCGA-A7-A13D	STK24\|ATF7	STK24	ATF7	13	12	-1	-1	3	8	6	0.3	99228999	53994805	tier1	CDS-5UTR	17059	non-validated	0
BRCA	TCGA-AC-A5EH-01A	TCGA-AC-A5EH	STK24\|PIP5K1B	STK24	PIP5K1B	13	9	-1	1	8	1	1	0.41	99171497	71433377	tier2	CDS-5UTR	17066	NA	0
LIHC	TCGA-BC-A10R-01A	TCGA-BC-A10R	STK24\|DOCK9	STK24	DOCK9	13	13	-1	-1	7	6	6	0.008	99228999	99462545	tier1	In-frame	17062	NA	0
LUAD	TCGA-50-5941-01A	TCGA-50-5941	STK24\|C8orf83	STK24	C8orf83	13	8	-1	-1	3	5	5	0.57	99228999	93929238	tier1	CDS-5UTR	17061	NA	0
SKCM	TCGA-BF-AAP7-01A	TCGA-BF-AAP7	STK24\|BRP44	STK24	BRP44	13	1	-1	-1	22	40	39	1.2	99228999	167893775	tier1	Out-of-frame	17060	NA	0
STAD	TCGA-BR-8297-01A	TCGA-BR-8297	STK24\|DOCK9	STK24	DOCK9	13	13	-1	-1	3	22	20	0.008	99228999	99449507	tier1	Out-of-frame	17063	NA	0
STAD	TCGA-VQ-AA6D-01A	TCGA-VQ-AA6D	STK24\|DOCK9	STK24	DOCK9	13	13	-1	-1	6	13	13	0.008	99171497	99532926	tier1	In-frame	17064	NA	0
SKCM	TCGA-EB-A550-01A	TCGA-EB-A550	ACP5\|GTF2F1	ACP5	GTF2F1	19	19	-1	-1	37	31	28	0.55	11688408	6389648	tier1	5UTR-CDS	302	NA	0.3706
HNSC	TCGA-UF-A7JJ-01A	TCGA-UF-A7JJ	PARP4\|COL9A1	PARP4	COL9A1	13	6	-1	-1	10	6	6	0.006	25073439	70993523	tier1	In-frame	12300	NA	0.36826
THYM	TCGA-4V-A9QJ-01A	TCGA-4V-A9QJ	PARP4\|GDF1	PARP4	GDF1	13	19	-1	-1	2	1	1	0.5	25008533	18980199	tier3	Out-of-frame	12301	NA	0.36579
BLCA	TCGA-GC-A3RC-01A	TCGA-GC-A3RC	DHRS12\|RASL11A	DHRS12	RASL11A	13	13	-1	1	15	16	15	0.37	52373670	27845621	tier1	Out-of-frame	4785	NA	0.35056
PRAD	TCGA-J4-A6G1-01A	TCGA-J4-A6G1	OLFM4\|TOP2B	OLFM4	TOP2B	13	3	1	-1	2	5	3	0.56	53626192	25674074	tier3	3UTR-CDS	12032	NA	0.37302
COAD	TCGA-G4-6323-01A	TCGA-G4-6323	OLFM4\|CLCN3	OLFM4	CLCN3	13	4	1	1	2	19	9	0.2	53626192	170623929	tier3	NA	12029	NA	0.36625

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