Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-EW-A1PF-01A | TCGA-EW-A1PF | ZMYND8|GTPBP1 | ZMYND8 | GTPBP1 | 20 | 22 | -1 | 1 | 92 | 115 | 104 | 100 | 45848909 | 39111912 | tier1 | In-frame | 20346 | NA | 0 |
| BRCA | TCGA-BH-A0H7-01A | TCGA-BH-A0H7 | ZMYND8|MN1 | ZMYND8 | MN1 | 20 | 22 | -1 | -1 | 9 | 6 | 6 | 0.12 | 45976600 | 28147084 | tier1 | In-frame | 20347 | NA | 0 |
| BRCA | TCGA-BH-A0H7-01A | TCGA-BH-A0H7 | ZMYND8|PITPNB | ZMYND8 | PITPNB | 20 | 22 | -1 | -1 | 15 | 4 | 4 | 1.9 | 45976600 | 28202607 | tier1 | NA | 20348 | NA | 0 |
| BRCA | TCGA-BH-A0C0-01A | TCGA-BH-A0C0 | ZMYND8|ZC4H2 | ZMYND8 | ZC4H2 | 20 | X | -1 | -1 | 2 | 1 | 1 | 1.8 | 45976600 | 64185810 | tier3 | CDS-5UTR | 20354 | NA | 0 |
| OV | TCGA-04-1365-01A | TCGA-04-1365 | ZMYND8|EYA2 | ZMYND8 | EYA2 | 20 | 20 | -1 | 1 | 21 | 23 | 19 | 0.15 | 45874752 | 45717878 | tier1 | In-frame | 20344 | NA | 0 |
| PRAD | TCGA-ZG-A9LZ-01A | TCGA-ZG-A9LZ | ZMYND8|RNF43 | ZMYND8 | RNF43 | 20 | 17 | -1 | -1 | 7 | 7 | 7 | 0.007 | 45976600 | 56448394 | tier1 | Out-of-frame | 20349 | NA | 0 |
| PRAD | TCGA-HC-7818-01A | TCGA-HC-7818 | ZMYND8|SPINLW1-WFDC6 | ZMYND8 | SPINLW1-WFDC6 | 20 | 20 | -1 | -1 | 6 | 1 | 1 | 2.7 | 45905058 | 44171506 | tier3 | In-frame | 20350 | NA | 0 |
| UCEC | TCGA-B5-A5OE-01A | TCGA-B5-A5OE | ZMYND8|EYA2 | ZMYND8 | EYA2 | 20 | 20 | -1 | 1 | 3 | 5 | 5 | 0.15 | 45852970 | 45700824 | tier1 | In-frame | 20345 | NA | 0 |
| UCEC | TCGA-B5-A3FB-01A | TCGA-B5-A3FB | ZMYND8|TFE3 | ZMYND8 | TFE3 | 20 | X | -1 | -1 | 19 | 5 | 4 | 0.65 | 45849965 | 48896935 | tier1 | Out-of-frame | 20353 | NA | 0 |
| SARC | TCGA-DX-A1KX-01A | TCGA-DX-A1KX | HNF4A|MYBL2 | HNF4A | MYBL2 | 20 | 20 | 1 | 1 | 8 | 6 | 5 | 1.1 | 43036115 | 42340128 | tier1 | Out-of-frame | 7880 | NA | 0.38077 |
| BRCA | TCGA-EW-A2FV-01A | TCGA-EW-A2FV | STK4|TSHZ2 | STK4 | TSHZ2 | 20 | 20 | 1 | 1 | 15 | 13 | 13 | 0.51 | 43615937 | 52103683 | tier1 | CDS-3UTR | 17093 | NA | 0 |
| BLCA | TCGA-GU-A42Q-01A | TCGA-GU-A42Q | BMP7|MACROD2 | BMP7 | MACROD2 | 20 | 20 | -1 | 1 | 5 | 5 | 5 | 0.017 | 55777531 | 15412050 | tier1 | Out-of-frame | 2129 | NA | 0.3673 |
| LUSC | TCGA-85-8664-01A | TCGA-85-8664 | BMP7|PIGU | BMP7 | PIGU | 20 | 20 | -1 | -1 | 10 | 7 | 6 | 0.81 | 55840761 | 33176411 | tier1 | Out-of-frame | 2130 | NA | 0.3633 |
| OV | TCGA-24-2288-01A | TCGA-24-2288 | BMP7|RBM38 | BMP7 | RBM38 | 20 | 20 | -1 | 1 | 4 | 23 | 21 | 0.097 | 55749987 | 55982599 | tier1 | Out-of-frame | 2131 | NA | 0.36525 |
| SKCM | TCGA-EE-A2GK-06A | TCGA-EE-A2GK | BIRC7|ZNF200 | BIRC7 | ZNF200 | 20 | 16 | 1 | -1 | 7 | 13 | 8 | 0.16 | 61870962 | 3285360 | tier1 | 3UTR-5UTR | 2118 | NA | 0.3678 |
| CHOL | TCGA-3X-AAVB-01A | TCGA-3X-AAVB | TRIB3|SLC24A3 | TRIB3 | SLC24A3 | 20 | 20 | 1 | 1 | 10 | 3 | 3 | 4.2 | 372223 | 19496132 | tier1 | Out-of-frame | 18607 | NA | 0 |
| LUAD | TCGA-75-6211-01A | TCGA-75-6211 | TRIB3|DEFB125 | TRIB3 | DEFB125 | 20 | 20 | 1 | 1 | 8 | 3 | 3 | 0.62 | 368945 | 76646 | tier1 | Out-of-frame | 18606 | NA | 0 |
| BRCA | TCGA-BH-A1FH-01A | TCGA-BH-A1FH | PLCB4|BMP2 | PLCB4 | BMP2 | 20 | 20 | 1 | 1 | 4 | 1 | 1 | 0.75 | 9049550 | 6750767 | tier4 | NA | 12963 | NA | 0.37017 |
| READ | TCGA-G5-6641-01A | TCGA-G5-6641 | PLCB4|RASA3 | PLCB4 | RASA3 | 20 | 13 | 1 | -1 | 4 | 5 | 4 | 3 | 9424890 | 114762215 | tier1 | In-frame | 12965 | NA | 0.3813 |
| UCEC | TCGA-PG-A7D5-01A | TCGA-PG-A7D5 | PLCB4|MACROD2 | PLCB4 | MACROD2 | 20 | 20 | 1 | 1 | 3 | 3 | 3 | 0.3 | 9288545 | 15843390 | tier1 | In-frame | 12964 | NA | 0.35532 |
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