Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-AN-A0FX-01A | TCGA-AN-A0FX | CHD8|RAB2B | CHD8 | RAB2B | 14 | 14 | -1 | -1 | 7 | 13 | 12 | 0.25 | 21924191 | 21936911 | tier1 | 5UTR-CDS | 3651 | NA | 0.37348 |
| BRCA | TCGA-AO-A128-01A | TCGA-AO-A128 | CHD8|TOX4 | CHD8 | TOX4 | 14 | 14 | -1 | 1 | 62 | 49 | 45 | 0.032 | 21898960 | 21957332 | tier1 | In-frame | 3653 | NA | 0.36786 |
| LGG | TCGA-DU-7302-01A | TCGA-DU-7302 | CHD8|KIAA1211 | CHD8 | KIAA1211 | 14 | 4 | -1 | 1 | 9 | 14 | 14 | 0.032 | 21924191 | 57045450 | tier1 | 5UTR-5UTR | 3650 | NA | 0.36826 |
| PRAD | TCGA-HC-7077-01A | TCGA-HC-7077 | CHD8|AP1S1 | CHD8 | AP1S1 | 14 | 7 | -1 | 1 | 63 | 6 | 6 | 0.38 | 21878010 | 100803800 | tier1 | In-frame | 3648 | NA | 0.37019 |
| LGG | TCGA-DU-6402-01A | TCGA-DU-6402 | PSMA6|PRKD1 | PSMA6 | PRKD1 | 14 | 14 | 1 | -1 | 14 | 5 | 4 | 1.6 | 35761758 | 30516993 | tier2 | NA | 13712 | NA | 0.38895 |
| HNSC | TCGA-CN-A497-01A | TCGA-CN-A497 | PSMA6|FAM177A1 | PSMA6 | FAM177A1 | 14 | 14 | 1 | 1 | 2 | 2 | 2 | 0.41 | 35747924 | 35522484 | tier2 | Out-of-frame | 13711 | NA | 0.36679 |
| THYM | TCGA-ZB-A965-01A | TCGA-ZB-A965 | PLTP|EEF2 | PLTP | EEF2 | 20 | 19 | -1 | -1 | 3 | 1 | 1 | 3.1 | 44527399 | 3985461 | tier3 | 3UTR-5UTR | 13050 | NA | 0.36959 |
| LUAD | TCGA-44-3919-01A | TCGA-44-3919 | GSS|ACSS2 | GSS | ACSS2 | 20 | 20 | -1 | 1 | 2 | 2 | 1 | 0.21 | 33543530 | 33513501 | tier2 | 5UTR-CDS | 7505 | NA | 0.34548 |
| HNSC | TCGA-CR-7382-01A | TCGA-CR-7382 | MMP9|UTRN | MMP9 | UTRN | 20 | 6 | 1 | 1 | 2 | 3 | 3 | 3.6 | 44645199 | 144665237 | tier3 | NA | 10551 | non-validated | 0.37559 |
| BLCA | TCGA-E7-A97Q-01A | TCGA-E7-A97Q | PYGB|PCSK2 | PYGB | PCSK2 | 20 | 20 | 1 | 1 | 4 | 1 | 1 | 0.2 | 25263913 | 17410080 | tier3 | Out-of-frame | 13997 | NA | 0 |
| COAD | TCGA-AA-3660-01A | TCGA-AA-3660 | PYGB|C20orf152 | PYGB | C20orf152 | 20 | 20 | 1 | 1 | 285 | 170 | 164 | 0.024 | 25273249 | 34575317 | tier2 | In-frame | 13996 | NA | 0 |
| LUSC | TCGA-85-7696-01A | TCGA-85-7696 | ABHD12|ENTPD6 | ABHD12 | ENTPD6 | 20 | 20 | -1 | 1 | 2 | 6 | 5 | 0.06 | 25371149 | 25203474 | tier2 | Out-of-frame | 82 | NA | 0.35052 |
| CESC | TCGA-C5-A1MK-01A | TCGA-C5-A1MK | ABHD12|TTI1 | ABHD12 | TTI1 | 20 | 20 | -1 | -1 | 3 | 2 | 2 | 0.3 | 25371149 | 36642259 | tier1 | CDS-5UTR | 86 | NA | 0.33103 |
| CESC | TCGA-C5-A1MK-01A | TCGA-C5-A1MK | ABHD12|UQCC | ABHD12 | UQCC | 20 | 20 | -1 | -1 | 2 | 1 | 1 | 0.078 | 25371149 | 33981999 | tier2 | Out-of-frame | 87 | NA | 0.33797 |
| COAD | TCGA-AA-3660-01A | TCGA-AA-3660 | ABHD12|GINS1 | ABHD12 | GINS1 | 20 | 20 | -1 | 1 | 5 | 1 | 1 | 0.85 | 25371149 | 25422338 | tier2 | Out-of-frame | 83 | NA | 0.34208 |
| COAD | TCGA-CM-5860-01A | TCGA-CM-5860 | ABHD12|PPP2R2A | ABHD12 | PPP2R2A | 20 | 8 | -1 | 1 | 29 | 22 | 20 | 100 | 25295561 | 26196406 | tier1 | In-frame | 85 | NA | 0.36526 |
| LUSC | TCGA-77-7142-01A | TCGA-77-7142 | ABHD12|KIF16B | ABHD12 | KIF16B | 20 | 20 | -1 | -1 | 6 | 8 | 6 | 1.4 | 25282855 | 16509085 | tier1 | In-frame | 84 | NA | 0.34469 |
| OV | TCGA-09-1673-01A | TCGA-09-1673 | ZMYND8|SULF2 | ZMYND8 | SULF2 | 20 | 20 | -1 | -1 | 202 | 29 | 26 | 3.3 | 45976600 | 46319039 | tier1 | Out-of-frame | 20351 | NA | 0 |
| UCEC | TCGA-AX-A3GI-01A | TCGA-AX-A3GI | ZMYND8|SULF2 | ZMYND8 | SULF2 | 20 | 20 | -1 | -1 | 4 | 6 | 5 | 3.3 | 45976600 | 46331414 | tier1 | In-frame | 20352 | NA | 0 |
| BRCA | TCGA-E2-A1LL-01A | TCGA-E2-A1LL | ZMYND8|CELF5 | ZMYND8 | CELF5 | 20 | 19 | -1 | 1 | 6 | 1 | 1 | 0.079 | 45976600 | 3250983 | tier4 | In-frame | 20343 | non-validated | 0 |
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