TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
OV	TCGA-20-0987-01A	TCGA-20-0987	HIF1A\|PRKCH	HIF1A	PRKCH	14	14	1	1	2	1	1	0.5	62162557	61909829	tier2	Out-of-frame	7756	NA	0.39003
STAD	TCGA-HU-A4GH-01A	TCGA-HU-A4GH	HIF1A\|PRKCH	HIF1A	PRKCH	14	14	1	1	4	63	55	0.5	62162557	61857943	tier1	Out-of-frame	7759	NA	0.39003
UCEC	TCGA-EO-A22U-01A	TCGA-EO-A22U	HIF1A\|PRKCH	HIF1A	PRKCH	14	14	1	1	2	2	2	0.5	62162557	61995793	tier4	In-frame	7758	NA	0.39003
LGG	TCGA-R8-A6MK-01A	TCGA-R8-A6MK	HIF1A\|VRK1	HIF1A	VRK1	14	14	1	1	34	32	27	0.85	62162557	97299804	tier1	CDS-5UTR	7766	NA	0.37277
BRCA	TCGA-D8-A1JL-01A	TCGA-D8-A1JL	HIF1A\|MNAT1	HIF1A	MNAT1	14	14	1	1	71	47	44	0.11	62162557	61262935	tier1	In-frame	7755	NA	0.37921
CESC	TCGA-DS-A1OC-01A	TCGA-DS-A1OC	HIF1A\|RP11-47I22.3	HIF1A	RP11-47I22.3	14	14	1	1	20	18	15	0.18	62162557	62117680	tier1	Out-of-frame	7763	NA	0.36851
CESC	TCGA-DS-A1OC-01A	TCGA-DS-A1OC	HIF1A\|RP11-47I22.4	HIF1A	RP11-47I22.4	14	14	1	1	20	13	13	1.3	62162557	62124323	tier1	NA	7765	NA	0.36851
KIRC	TCGA-CJ-4868-01A	TCGA-CJ-4868	HIF1A\|RP11-47I22.3	HIF1A	RP11-47I22.3	14	14	1	1	5	3	1	0.18	62162557	62117680	tier3	Out-of-frame	7762	NA	0.36851
LUSC	TCGA-22-1002-01A	TCGA-22-1002	HIF1A\|RP11-47I22.3	HIF1A	RP11-47I22.3	14	14	1	1	10	7	6	0.18	62207906	62117680	tier1	Out-of-frame	7760	NA	0.36851
LUSC	TCGA-6A-AB49-01A	TCGA-6A-AB49	HIF1A\|RP11-47I22.3	HIF1A	RP11-47I22.3	14	14	1	1	2	1	1	0.18	62162557	62117680	tier3	Out-of-frame	7761	NA	0.36851
LUSC	TCGA-37-A5EN-01A	TCGA-37-A5EN	HIF1A\|RP11-47I22.4	HIF1A	RP11-47I22.4	14	14	1	1	17	18	17	1.3	62162557	62124323	tier4	NA	7764	NA	0.36851
SARC	TCGA-LI-A9QH-01A	TCGA-LI-A9QH	HIF1A\|C14orf37	HIF1A	C14orf37	14	14	1	-1	7	5	5	0.91	62162557	58606132	tier1	CDS-5UTR	7754	NA	0
CESC	TCGA-VS-A8EC-01A	TCGA-VS-A8EC	VRK1\|PAPOLA	VRK1	PAPOLA	14	14	1	1	13	48	43	0.28	97263784	97022184	tier1	5UTR-CDS	19680	NA	0
HNSC	TCGA-HD-7753-01A	TCGA-HD-7753	VRK1\|SAMD4A	VRK1	SAMD4A	14	14	1	1	3	1	1	0.01	97327072	55168780	tier2	Out-of-frame	19681	validated	0
SKCM	TCGA-D3-A2JA-06A	TCGA-D3-A2JA	RPS6KA5\|BMP4	RPS6KA5	BMP4	14	14	-1	-1	3	2	2	0.082	91526676	54420118	tier1	CDS-5UTR	15054	NA	0
BRCA	TCGA-B6-A0I9-01A	TCGA-B6-A0I9	RPS6KA5\|C14orf132	RPS6KA5	C14orf132	14	14	-1	1	7	13	13	1.2	91526676	96552848	tier1	CDS-5UTR	15055	NA	0
LUSC	TCGA-77-A5G6-01A	TCGA-77-A5G6	RPS6KA5\|ITPK1	RPS6KA5	ITPK1	14	14	-1	-1	4	6	4	0.5	91386550	93483146	tier1	Out-of-frame	15056	NA	0
BLCA	TCGA-E7-A85H-01A	TCGA-E7-A85H	DHRS2\|IL25	DHRS2	IL25	14	14	1	1	736	602	555	0.28	24109104	23844834	tier1	Out-of-frame	4786	NA	0.34567
SARC	TCGA-DX-A7EU-01A	TCGA-DX-A7EU	CHD8\|TG	CHD8	TG	14	8	-1	1	94	333	324	0.71	21924191	134144056	tier1	5UTR-CDS	3652	NA	0.37399
BRCA	TCGA-PE-A5DD-01A	TCGA-PE-A5DD	CHD8\|IMPG1	CHD8	IMPG1	14	6	-1	-1	6	6	5	1.7	21894287	76744504	tier1	Out-of-frame	3649	NA	0.3679

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