TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
HNSC	TCGA-P3-A5QA-01A	TCGA-P3-A5QA	L3MBTL2\|MFI2	L3MBTL2	MFI2	22	3	1	-1	2	2	1	0.46	41617291	196744161	tier4	Out-of-frame	9175	NA	0.3594
SKCM	TCGA-EB-A5KH-06A	TCGA-EB-A5KH	L3MBTL2\|EFCAB6	L3MBTL2	EFCAB6	22	22	1	-1	4	9	8	0.047	41610030	44074043	tier1	In-frame	9174	NA	0.35567
BRCA	TCGA-BH-A0H7-01A	TCGA-BH-A0H7	CERK\|SLC25A17	CERK	SLC25A17	22	22	-1	-1	23	16	15	1.3	47115983	41195087	tier1	Out-of-frame	3571	NA	0.34579
PRAD	TCGA-HC-A8D0-01A	TCGA-HC-A8D0	CERK\|SCUBE1	CERK	SCUBE1	22	22	-1	-1	6	1	1	0.05	47103740	43654341	tier2	In-frame	3570	NA	0.35454
PRAD	TCGA-KC-A4BL-01A	TCGA-KC-A4BL	BRD1\|RTN4RL1	BRD1	RTN4RL1	22	17	-1	-1	3	1	1	0.043	50197852	1841102	tier3	Out-of-frame	2199	NA	0.3684
GBM	TCGA-06-0648-01A	TCGA-06-0648	BRD1\|MAPK12	BRD1	MAPK12	22	22	-1	-1	37	78	64	0.007	50181038	50696730	tier1	Out-of-frame	2197	non-validated	0.38546
LUAD	TCGA-MP-A4TI-01A	TCGA-MP-A4TI	BRD1\|APOL5	BRD1	APOL5	22	22	-1	1	15	11	10	0.82	50187682	36125401	tier1	CDS-3UTR	2196	NA	0.36789
LUAD	TCGA-44-7660-01A	TCGA-44-7660	BRD1\|MLC1	BRD1	MLC1	22	22	-1	-1	2	1	1	2.3	50187682	50523390	tier3	CDS-5UTR	2198	NA	0.37062
PRAD	TCGA-V1-A8WV-01A	TCGA-V1-A8WV	HDAC10\|MORN5	HDAC10	MORN5	22	9	-1	1	5	4	2	100	50685108	124962164	tier1	Out-of-frame	7616	NA	0.36344
OV	TCGA-09-1674-01A	TCGA-09-1674	CDKL1\|ATL1	CDKL1	ATL1	14	14	-1	1	2	1	1	0.22	50862419	51057659	tier2	In-frame	3459	NA	0.3631
LUSC	TCGA-37-4130-01A	TCGA-37-4130	PYGL\|TRIM9	PYGL	TRIM9	14	14	-1	-1	2	2	2	0.16	51374989	51444071	tier3	In-frame	13998	NA	0
LUAD	TCGA-86-A4D0-01A	TCGA-86-A4D0	CDKN3\|SFTA3	CDKN3	SFTA3	14	14	1	-1	45	35	35	0.7	54868297	36960496	tier1	Out-of-frame	3473	NA	0.36363
ESCA	TCGA-L5-A4OM-01A	TCGA-L5-A4OM	ATP6V1D\|ZFYVE26	ATP6V1D	ZFYVE26	14	14	-1	-1	2	15	15	0.63	67826375	68272335	tier2	Out-of-frame	1758	NA	0.34709
PRAD	TCGA-G9-6371-01A	TCGA-G9-6371	ATP6V1D\|CBS	ATP6V1D	CBS	14	21	-1	-1	2	8	7	0.59	67804788	44476011	tier4	NA	1757	NA	0.35377
LIHC	TCGA-FV-A495-01A	TCGA-FV-A495	PSMA3\|STRADA	PSMA3	STRADA	14	17	1	-1	33	19	14	100	58724716	61781111	tier1	Out-of-frame	13708	non-validated	0.37875
BRCA	TCGA-OL-A5RU-01A	TCGA-OL-A5RU	PSMA3\|ZNFX1	PSMA3	ZNFX1	14	20	1	-1	2	2	2	3.1	58738724	47863418	tier4	NA	13709	NA	0.37253
ESCA	TCGA-VR-A8Q7-01A	TCGA-VR-A8Q7	PSMA3\|ACTR10	PSMA3	ACTR10	14	14	1	1	6	60	57	0.75	58734238	58669573	tier1	In-frame	13707	NA	0.37311
LIHC	TCGA-BC-A216-01A	TCGA-BC-A216	PSMA3\|ACTR10	PSMA3	ACTR10	14	14	1	1	151	115	108	0.75	58714550	58697117	tier1	In-frame	13705	validated	0.37311
PAAD	TCGA-IB-AAUP-01A	TCGA-IB-AAUP	PSMA3\|ACTR10	PSMA3	ACTR10	14	14	1	1	225	256	233	0.75	58718960	58701088	tier1	Out-of-frame	13706	NA	0.37311
LUAD	TCGA-44-2668-01A	TCGA-44-2668	HIF1A\|PRKCH	HIF1A	PRKCH	14	14	1	1	56	37	33	0.5	62207906	61995793	tier1	In-frame	7757	non-validated	0.39003

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