TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
LGG	TCGA-TM-A84J-01A	TCGA-TM-A84J	PDGFB\|DGCR2	PDGFB	DGCR2	22	22	-1	-1	363	244	227	0.014	39626089	19077003	tier1	In-frame	12526	NA	0.36928
SKCM	TCGA-ER-A19C-06A	TCGA-ER-A19C	TAB1\|PHF21B	TAB1	PHF21B	22	22	1	-1	21	20	18	0.12	39813854	45281818	tier1	Out-of-frame	17287	NA	0
UCS	TCGA-NA-A4QY-01A	TCGA-NA-A4QY	TAB1\|C22orf42	TAB1	C22orf42	22	22	1	-1	3	4	3	0.16	39824188	32550305	tier1	Out-of-frame	17286	NA	0
BRCA	TCGA-D8-A1JM-01A	TCGA-D8-A1JM	CACNA1I\|TAB1	CACNA1I	TAB1	22	22	1	1	8	8	8	0.027	40058440	39822708	tier1	In-frame	2866	NA	0.34422
BLCA	TCGA-XF-AAMY-01A	TCGA-XF-AAMY	CACNA1I\|FBXW5	CACNA1I	FBXW5	22	9	1	-1	17	18	13	0.019	40078666	139835623	tier1	Out-of-frame	2864	NA	0.36968
BLCA	TCGA-2F-A9KT-01A	TCGA-2F-A9KT	CACNA1I\|SYNGR1	CACNA1I	SYNGR1	22	22	1	1	6	2	2	0.45	40069087	39777701	tier1	Out-of-frame	2865	NA	0.3486
BLCA	TCGA-BT-A20V-01A	TCGA-BT-A20V	SLC25A17\|RBFOX2	SLC25A17	RBFOX2	22	22	-1	-1	2	1	1	0.59	41188529	36206051	tier2	Out-of-frame	16096	non-validated	0
KIRC	TCGA-BP-5186-01A	TCGA-BP-5186	SLC25A17\|EPN3	SLC25A17	EPN3	22	17	-1	1	2	2	2	0.029	41215199	48616245	tier3	In-frame	16095	NA	0
SKCM	TCGA-FS-A4F4-06A	TCGA-FS-A4F4	EP300\|FBLN1	EP300	FBLN1	22	22	1	1	30	20	18	1	41551117	45996187	tier1	Out-of-frame	5608	NA	0.39018
BLCA	TCGA-BT-A0S7-01A	TCGA-BT-A0S7	EP300\|MCHR1	EP300	MCHR1	22	22	1	1	61	37	36	0.023	41489102	41076953	tier1	In-frame	5611	NA	0.39059
LIHC	TCGA-DD-A73F-01A	TCGA-DD-A73F	EP300\|XPNPEP3	EP300	XPNPEP3	22	22	1	1	115	28	27	0.78	41551117	41363803	tier1	CDS-3UTR	5617	NA	0.38594
BLCA	TCGA-4Z-AA84-01A	TCGA-4Z-AA84	EP300\|HAUS8	EP300	HAUS8	22	19	1	-1	37	14	13	1.7	41513825	17166812	tier1	In-frame	5609	NA	0.38375
BRCA	TCGA-GI-A2C9-01A	TCGA-GI-A2C9	EP300\|IPO5	EP300	IPO5	22	13	1	1	5	6	6	0.17	41489102	98634757	tier1	Out-of-frame	5610	non-validated	0.38637
LGG	TCGA-DU-6404-01A	TCGA-DU-6404	EP300\|BCOR	EP300	BCOR	22	X	1	-1	186	8	8	2.2	41572532	39930412	tier1	In-frame	5605	non-validated	0.3869
LGG	TCGA-HT-7480-01A	TCGA-HT-7480	EP300\|TNRC6B	EP300	TNRC6B	22	22	1	1	6	4	4	0.003	41546202	40681649	tier1	In-frame	5615	NA	0.38496
LIHC	TCGA-DD-A73F-01A	TCGA-DD-A73F	EP300\|RBX1	EP300	RBX1	22	22	1	1	134	8	7	1.4	41551117	41363803	tier1	In-frame	5613	NA	0.38709
LUSC	TCGA-34-5929-01A	TCGA-34-5929	EP300\|TTC28	EP300	TTC28	22	22	1	-1	2	2	1	0.33	41523752	28702631	tier3	Out-of-frame	5616	NA	0.38964
PRAD	TCGA-HC-7077-01A	TCGA-HC-7077	EP300\|FAM55B	EP300	FAM55B	22	11	1	1	18	13	13	0.78	41546202	114568767	tier2	In-frame	5607	NA	0.38667
STAD	TCGA-CD-A486-01A	TCGA-CD-A486	EP300\|TNRC6B	EP300	TNRC6B	22	22	1	1	12	114	104	0.003	41489102	40642019	tier1	Out-of-frame	5614	NA	0.38496
UCEC	TCGA-AX-A3G4-01A	TCGA-AX-A3G4	EP300\|PAICS	EP300	PAICS	22	4	1	1	20	15	15	0.094	41513825	57325538	tier1	Out-of-frame	5612	NA	0.38643

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