TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
LUAD	TCGA-62-A46O-01A	TCGA-62-A46O	MAPK1\|TOP3B	MAPK1	TOP3B	22	22	-1	-1	9	4	4	0.1	22221612	22313604	tier1	Out-of-frame	9932	NA	0.38296
UCEC	TCGA-EY-A3QX-01A	TCGA-EY-A3QX	MAPK1\|PRODH	MAPK1	PRODH	22	22	-1	-1	32	31	30	4.1	22221612	18918711	tier1	Out-of-frame	9931	NA	0.38427
PRAD	TCGA-J4-AATZ-01A	TCGA-J4-AATZ	GGT1\|PRODH	GGT1	PRODH	22	22	1	-1	11	7	7	0.28	24990853	18918711	tier1	NA	7053	NA	0.34272
LUAD	TCGA-49-AARE-01A	TCGA-49-AARE	SLC35E4\|SEC14L2	SLC35E4	SEC14L2	22	22	1	1	4	3	3	0.029	31033056	30802331	tier1	In-frame	16163	NA	0
SKCM	TCGA-FS-A4F4-06A	TCGA-FS-A4F4	ADRBK2\|EP300	ADRBK2	EP300	22	22	1	1	18	22	21	0.98	25961120	41550999	tier1	Out-of-frame	545	NA	0.39468
BLCA	TCGA-FD-A43P-01A	TCGA-FD-A43P	ADRBK2\|RHBDL3	ADRBK2	RHBDL3	22	17	1	1	28	25	22	1.7	25961120	30615811	tier1	Out-of-frame	546	NA	0.3804
BLCA	TCGA-C4-A0F7-01A	TCGA-C4-A0F7	ADRBK2\|AP1B1	ADRBK2	AP1B1	22	22	1	-1	29	21	21	0.003	26086250	29747814	tier1	In-frame	544	validated	0.38512
BRCA	TCGA-A2-A0T3-01A	TCGA-A2-A0T3	ADRBK2\|SF3A1	ADRBK2	SF3A1	22	22	1	-1	21	14	13	0.5	26040632	30749061	tier1	In-frame	547	NA	0.38625
PRAD	TCGA-J4-AATZ-01A	TCGA-J4-AATZ	ADRBK2\|ZNRF3	ADRBK2	ZNRF3	22	22	1	1	4	4	3	2.4	25961120	29383064	tier1	Out-of-frame	548	NA	0.38142
STAD	TCGA-BR-8382-01A	TCGA-BR-8382	SLC5A1\|YWHAH	SLC5A1	YWHAH	22	22	1	1	2	9	9	0.34	32500878	32352126	tier2	Out-of-frame	16279	NA	0
STAD	TCGA-VQ-AA6D-01A	TCGA-VQ-AA6D	SLC5A1\|YWHAH	SLC5A1	YWHAH	22	22	1	1	2	30	26	0.34	32446001	32352126	tier2	In-frame	16280	NA	0
LUAD	TCGA-93-8067-01A	TCGA-93-8067	TCF20\|MKL1	TCF20	MKL1	22	22	-1	-1	18	10	10	0.34	42605657	40831558	tier2	Out-of-frame	17588	NA	0
PRAD	TCGA-G9-6348-01A	TCGA-G9-6348	XBP1\|KLK2	XBP1	KLK2	22	19	-1	1	2	1	1	0.66	29190549	51376695	tier3	3UTR-5UTR	19950	NA	0
LUAD	TCGA-86-6851-01A	TCGA-86-6851	XBP1\|UTRN	XBP1	UTRN	22	6	-1	1	2	16	6	0.81	29190549	144665237	tier3	NA	19951	NA	0
PRAD	TCGA-HC-7736-01A	TCGA-HC-7736	XBP1\|CCT5	XBP1	CCT5	22	5	-1	1	2	21	14	2.9	29190549	10250033	tier3	3UTR-5UTR	19949	NA	0
PRAD	TCGA-HC-7745-01A	TCGA-HC-7745	TIMP3\|SPCS3	TIMP3	SPCS3	22	4	1	1	2	7	2	0.062	33259030	177243321	tier3	3UTR-CDS	17834	NA	0
SKCM	TCGA-GN-A26C-01A	TCGA-GN-A26C	TIMP3\|ZNFX1	TIMP3	ZNFX1	22	20	1	-1	2	2	2	0.099	33259030	47863418	tier3	3UTR-CDS	17835	non-validated	0
BLCA	TCGA-XF-AAMW-01A	TCGA-XF-AAMW	TSPO\|PRR5	TSPO	PRR5	22	22	1	1	4	12	12	0.27	43547610	45121124	tier1	5UTR-CDS	18820	NA	0
SKCM	TCGA-FS-A4F4-06A	TCGA-FS-A4F4	TSPO\|CDH18	TSPO	CDH18	22	5	1	-1	77	81	73	100	43557196	19981287	tier1	CDS-5UTR	18819	NA	0
HNSC	TCGA-CX-7086-01A	TCGA-CX-7086	CBX7\|VPREB1	CBX7	VPREB1	22	22	-1	1	12	6	6	0.38	39545794	22599358	tier1	Out-of-frame	3092	non-validated	0.36181

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