Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| LAML | TCGA-AB-2897-03A | TCGA-AB-2897 | MKNK2|RNF126 | MKNK2 | RNF126 | 19 | 19 | -1 | -1 | 2 | 6 | 5 | 0.22 | 2041839 | 652884 | tier2 | In-frame | 10429 | NA | 0.38695 |
| KIRP | TCGA-P4-A5EB-01A | TCGA-P4-A5EB | KLHL22|RANGAP1 | KLHL22 | RANGAP1 | 22 | 22 | -1 | -1 | 28 | 20 | 17 | 0.11 | 20800730 | 41652828 | tier1 | In-frame | 9062 | NA | 0.37496 |
| LUSC | TCGA-NK-A5CX-01A | TCGA-NK-A5CX | KLHL22|DENND5A | KLHL22 | DENND5A | 22 | 11 | -1 | -1 | 7 | 3 | 3 | 1.6 | 20843272 | 9229179 | tier1 | Out-of-frame | 9061 | NA | 0.35511 |
| LUSC | TCGA-66-2793-01A | TCGA-66-2793 | KLHL22|ZNF74 | KLHL22 | ZNF74 | 22 | 22 | -1 | 1 | 20 | 7 | 7 | 0.29 | 20843272 | 20754922 | tier1 | Out-of-frame | 9063 | non-validated | 0.37887 |
| LIHC | TCGA-2Y-A9HA-01A | TCGA-2Y-A9HA | SERPIND1|MICALL1 | SERPIND1 | MICALL1 | 22 | 22 | 1 | 1 | 36 | 44 | 37 | 1.4 | 21140436 | 38333087 | tier1 | Out-of-frame | 15669 | NA | 0 |
| BRCA | TCGA-PE-A5DE-01A | TCGA-PE-A5DE | SNAP29|IGLL1 | SNAP29 | IGLL1 | 22 | 22 | 1 | -1 | 88 | 91 | 81 | 1.7 | 21224821 | 23917269 | tier1 | In-frame | 16479 | NA | 0 |
| PRAD | TCGA-V1-A8WN-01A | TCGA-V1-A8WN | MMP11|GAS2L1 | MMP11 | GAS2L1 | 22 | 22 | 1 | 1 | 4 | 11 | 10 | 0.96 | 24115165 | 29706429 | tier1 | In-frame | 10542 | NA | 0.36089 |
| LUSC | TCGA-77-8140-01A | TCGA-77-8140 | BCL2L13|CECR2 | BCL2L13 | CECR2 | 22 | 22 | 1 | 1 | 2 | 2 | 2 | 0.9 | 18166087 | 18027838 | tier2 | In-frame | 2022 | NA | 0.36127 |
| BLCA | TCGA-DK-A1A3-01A | TCGA-DK-A1A3 | BCL2L13|ZNF383 | BCL2L13 | ZNF383 | 22 | 19 | 1 | 1 | 4 | 2 | 2 | 0.93 | 18185152 | 37733371 | tier2 | Out-of-frame | 2029 | NA | 0.35742 |
| HNSC | TCGA-T2-A6X0-01A | TCGA-T2-A6X0 | BCL2L13|CUX2 | BCL2L13 | CUX2 | 22 | 12 | 1 | 1 | 10 | 11 | 8 | 1.1 | 18138598 | 111772245 | tier1 | In-frame | 2023 | NA | 0.35393 |
| HNSC | TCGA-T3-A92N-01A | TCGA-T3-A92N | BCL2L13|VPS8 | BCL2L13 | VPS8 | 22 | 3 | 1 | 1 | 6 | 7 | 6 | 0.002 | 18178976 | 184616353 | tier1 | In-frame | 2028 | NA | 0.34393 |
| KIRP | TCGA-P4-A5EB-01A | TCGA-P4-A5EB | BCL2L13|GTPBP1 | BCL2L13 | GTPBP1 | 22 | 22 | 1 | 1 | 44 | 19 | 19 | 0.23 | 18121652 | 39126617 | tier4 | 5UTR-CDS | 2026 | NA | 0.36391 |
| LIHC | TCGA-QA-A7B7-01A | TCGA-QA-A7B7 | BCL2L13|SPECC1 | BCL2L13 | SPECC1 | 22 | 17 | 1 | 1 | 12 | 6 | 6 | 0.11 | 18178976 | 20107646 | tier1 | Out-of-frame | 2027 | NA | 0.35054 |
| PRAD | TCGA-HI-7168-01A | TCGA-HI-7168 | BCL2L13|GAB4 | BCL2L13 | GAB4 | 22 | 22 | 1 | -1 | 166 | 151 | 139 | 1.5 | 18138598 | 17446158 | tier1 | In-frame | 2025 | NA | 0.34904 |
| UCS | TCGA-N6-A4VE-01A | TCGA-N6-A4VE | BCL2L13|DGCR14 | BCL2L13 | DGCR14 | 22 | 22 | 1 | -1 | 70 | 48 | 44 | 3 | 18166087 | 19124945 | tier1 | In-frame | 2024 | NA | 0.34922 |
| HNSC | TCGA-CV-7424-01A | TCGA-CV-7424 | PPIL2|KIAA1671 | PPIL2 | KIAA1671 | 22 | 22 | 1 | 1 | 2 | 1 | 1 | 0.42 | 22037546 | 25577666 | tier3 | In-frame | 13297 | NA | 0.34477 |
| PAAD | TCGA-IB-7647-01A | TCGA-IB-7647 | PPIL2|TBX1 | PPIL2 | TBX1 | 22 | 22 | 1 | 1 | 5 | 7 | 6 | 1 | 22029404 | 19766743 | tier1 | In-frame | 13298 | NA | 0.34901 |
| HNSC | TCGA-CN-A498-01A | TCGA-CN-A498 | MAPK1|NOTCH1 | MAPK1 | NOTCH1 | 22 | 9 | -1 | -1 | 6 | 1 | 1 | 1.1 | 22153301 | 139414017 | tier2 | Out-of-frame | 9930 | NA | 0.39407 |
| BRCA | TCGA-GM-A3XL-01A | TCGA-GM-A3XL | MAPK1|KCNJ4 | MAPK1 | KCNJ4 | 22 | 22 | -1 | -1 | 7 | 11 | 10 | 0.019 | 22160139 | 38824176 | tier1 | CDS-5UTR | 9929 | non-validated | 0.3852 |
| LUAD | TCGA-69-7979-01A | TCGA-69-7979 | MAPK1|ARHGEF7 | MAPK1 | ARHGEF7 | 22 | 13 | -1 | 1 | 6 | 7 | 7 | 0.18 | 22221612 | 111806252 | tier1 | Out-of-frame | 9928 | NA | 0.38875 |
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