Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| STAD | TCGA-RD-A7BT-01A | TCGA-RD-A7BT | PCSK5|DDX58 | PCSK5 | DDX58 | 9 | 9 | 1 | -1 | 2 | 24 | 23 | 1.6 | 78682959 | 32500937 | tier3 | In-frame | 12441 | NA | 0.35924 |
| BRCA | TCGA-A8-A07I-01A | TCGA-A8-A07I | SCD|GPR19 | SCD | GPR19 | 10 | 12 | 1 | -1 | 52 | 40 | 35 | 1.2 | 102108103 | 12815404 | tier1 | CDS-5UTR | 15397 | validated | 0 |
| LGG | TCGA-TM-A84J-01A | TCGA-TM-A84J | SCD|SEC61A2 | SCD | SEC61A2 | 10 | 10 | 1 | 1 | 278 | 643 | 610 | 0.13 | 102116521 | 12191594 | tier1 | In-frame | 15398 | NA | 0 |
| LUSC | TCGA-6A-AB49-01A | TCGA-6A-AB49 | ERMP1|RBBP8 | ERMP1 | RBBP8 | 9 | 18 | -1 | 1 | 5 | 2 | 2 | 0.18 | 5830727 | 20555116 | tier1 | In-frame | 5785 | NA | 0.35561 |
| PRAD | TCGA-HC-A48F-01A | TCGA-HC-A48F | NRP1|PTEN | NRP1 | PTEN | 10 | 10 | -1 | 1 | 10 | 5 | 4 | 0.16 | 33619636 | 89717610 | tier1 | Out-of-frame | 11757 | NA | 0.38903 |
| BRCA | TCGA-D8-A1JH-01A | TCGA-D8-A1JH | NRP1|VSTM4 | NRP1 | VSTM4 | 10 | 10 | -1 | -1 | 26 | 8 | 6 | 1.6 | 33619636 | 50227820 | tier1 | Out-of-frame | 11758 | NA | 0.36917 |
| LGG | TCGA-HT-7690-01A | TCGA-HT-7690 | NRP1|CUL2 | NRP1 | CUL2 | 10 | 10 | -1 | -1 | 3 | 3 | 3 | 0.9 | 33619636 | 35299370 | tier1 | Out-of-frame | 11756 | NA | 0.38397 |
| CESC | TCGA-DS-A1OC-01A | TCGA-DS-A1OC | FBXL19|RNF40 | FBXL19 | RNF40 | 16 | 16 | 1 | 1 | 18 | 14 | 13 | 0.22 | 30941905 | 30785259 | tier1 | Out-of-frame | 6298 | NA | 0.36184 |
| PAAD | TCGA-US-A779-01A | TCGA-US-A779 | MTAP|PTPRD | MTAP | PTPRD | 9 | 9 | 1 | -1 | 7 | 24 | 15 | 0.18 | 21838009 | 9766851 | tier1 | CDS-5UTR | 10773 | NA | 0.3654 |
| BLCA | TCGA-FJ-A871-01A | TCGA-FJ-A871 | MTAP|LINGO2 | MTAP | LINGO2 | 9 | 9 | 1 | -1 | 3 | 2 | 1 | 0.19 | 21838009 | 27950704 | tier2 | CDS-5UTR | 10770 | NA | 0.33836 |
| MESO | TCGA-LK-A4O5-01A | TCGA-LK-A4O5 | MTAP|LINGO2 | MTAP | LINGO2 | 9 | 9 | 1 | -1 | 13 | 5 | 4 | 0.19 | 21854869 | 28476023 | tier1 | CDS-5UTR | 10771 | NA | 0.33836 |
| BRCA | TCGA-A2-A04Q-01A | TCGA-A2-A04Q | MTAP|CDKN2A | MTAP | CDKN2A | 9 | 9 | 1 | -1 | 4 | 6 | 6 | 0.26 | 21818201 | 21971207 | tier1 | Out-of-frame | 10767 | validated | 0.37068 |
| LUAD | TCGA-97-8176-01A | TCGA-97-8176 | MTAP|EXOC6B | MTAP | EXOC6B | 9 | 2 | 1 | -1 | 7 | 3 | 2 | 0.36 | 21854869 | 72606999 | tier1 | In-frame | 10769 | NA | 0.35356 |
| LUAD | TCGA-86-7954-01A | TCGA-86-7954 | MTAP|POC1B | MTAP | POC1B | 9 | 12 | 1 | -1 | 5 | 10 | 10 | 0.66 | 21802780 | 89885892 | tier1 | Out-of-frame | 10772 | NA | 0.33164 |
| LUSC | TCGA-63-A5MM-01A | TCGA-63-A5MM | MTAP|EEF1A2 | MTAP | EEF1A2 | 9 | 20 | 1 | -1 | 16 | 10 | 8 | 1.4 | 21802780 | 62127388 | tier1 | In-frame | 10768 | NA | 0.36022 |
| MESO | TCGA-3H-AB3M-01A | TCGA-3H-AB3M | MTAP|CDKN2A | MTAP | CDKN2A | 9 | 9 | 1 | -1 | 25 | 73 | 66 | 0.26 | 21815518 | 21968241 | tier1 | Out-of-frame | 10766 | NA | 0.37068 |
| LGG | TCGA-FG-8187-01A | TCGA-FG-8187 | HCN2|BSG | HCN2 | BSG | 19 | 19 | 1 | 1 | 17 | 22 | 20 | 0.85 | 590577 | 579500 | tier1 | Out-of-frame | 7610 | NA | 0.36596 |
| CESC | TCGA-C5-A2LZ-01A | TCGA-C5-A2LZ | HCN2|ALS2CR11 | HCN2 | ALS2CR11 | 19 | 2 | 1 | -1 | 2 | 2 | 1 | 100 | 590577 | 202412333 | tier2 | In-frame | 7609 | NA | 0.36783 |
| BRCA | TCGA-EW-A1PA-01A | TCGA-EW-A1PA | MKNK2|FAM151A | MKNK2 | FAM151A | 19 | 1 | -1 | -1 | 6 | 7 | 6 | 0.077 | 2046185 | 55076228 | tier1 | Out-of-frame | 10428 | NA | 0.38437 |
| BRCA | TCGA-BH-A1FD-01A | TCGA-BH-A1FD | MKNK2|ZFR2 | MKNK2 | ZFR2 | 19 | 19 | -1 | -1 | 10 | 25 | 25 | 0.053 | 2046366 | 3852612 | tier1 | Out-of-frame | 10430 | NA | 0.38515 |
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