TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
CESC	TCGA-PN-A8MA-01A	TCGA-PN-A8MA	JAK2\|RCL1	JAK2	RCL1	9	9	1	1	38	24	23	0.4	5090911	4834141	tier1	Out-of-frame	8475	NA	0.38237
HNSC	TCGA-HD-7229-01A	TCGA-HD-7229	JAK2\|GLDC	JAK2	GLDC	9	9	1	-1	2	1	1	0.71	5029906	6565429	tier3	In-frame	8473	NA	0.38307
LUAD	TCGA-83-5908-01A	TCGA-83-5908	JAK2\|CSTF3	JAK2	CSTF3	9	11	1	-1	3	3	3	0.53	4986022	33108687	tier1	5UTR-CDS	8470	NA	0.38411
SARC	TCGA-DX-A23R-01A	TCGA-DX-A23R	JAK2\|PKNOX2	JAK2	PKNOX2	9	11	1	1	3	1	1	0.015	4986022	125201715	tier3	5UTR-5UTR	8474	non-validated	0.3844
SKCM	TCGA-D3-A51H-06A	TCGA-D3-A51H	JAK2\|CTD-2021H9.3	JAK2	CTD-2021H9.3	9	12	1	-1	5	4	2	0.36	5029906	71441459	tier1	Out-of-frame	8471	NA	0.38116
SKCM	TCGA-WE-A8ZN-06A	TCGA-WE-A8ZN	JAK2\|DOCK8	JAK2	DOCK8	9	9	1	1	8	5	1	0.4	5055788	286461	tier4	In-frame	8472	NA	0.38272
LIHC	TCGA-CC-5263-01A	TCGA-CC-5263	ABL1\|PRDM12	ABL1	PRDM12	9	9	1	1	18	18	18	0.043	133589842	133553916	tier1	Out-of-frame	113	NA	0.3924
SARC	TCGA-DX-A6Z0-01A	TCGA-DX-A6Z0	ABL1\|PTPRN2	ABL1	PTPRN2	9	7	1	-1	2	2	1	0.28	133589842	157475629	tier2	Out-of-frame	114	NA	0.39131
PRAD	TCGA-ZG-A9LN-01A	TCGA-ZG-A9LN	ABL1\|SLC38A10	ABL1	SLC38A10	9	17	1	-1	2	3	3	0.021	133730483	79246427	tier3	In-frame	115	NA	0.39057
LAML	TCGA-AB-2817-03A	TCGA-AB-2817	ABL1\|BCR	ABL1	BCR	9	22	1	1	6	3	3	0.035	133589842	23595986	tier1	In-frame	105	NA	0.39627
LAML	TCGA-AB-2901-03A	TCGA-AB-2901	ABL1\|BCR	ABL1	BCR	9	22	1	1	8	9	8	0.035	133589842	23634728	tier1	In-frame	106	NA	0.39627
LAML	TCGA-AB-2941-03A	TCGA-AB-2941	ABL1\|BCR	ABL1	BCR	9	22	1	1	9	8	8	0.035	133589842	23634728	tier1	In-frame	107	NA	0.39627
BLCA	TCGA-DK-A3IL-01A	TCGA-DK-A3IL	ABL1\|DDX27	ABL1	DDX27	9	20	1	1	2	2	1	0.55	133763062	47849303	tier4	NA	109	non-validated	0.39078
BRCA	TCGA-D8-A1J9-01A	TCGA-D8-A1J9	ABL1\|ADAMTSL2	ABL1	ADAMTSL2	9	9	1	1	12	7	7	0.26	133589842	136405720	tier1	In-frame	104	NA	0.39172
HNSC	TCGA-CV-6950-01A	TCGA-CV-6950	ABL1\|EXOSC2	ABL1	EXOSC2	9	9	1	1	8	7	7	5.2	133589842	133570879	tier1	Out-of-frame	110	NA	0.39031
LIHC	TCGA-ZS-A9CF-01A	TCGA-ZS-A9CF	ABL1\|FUBP3	ABL1	FUBP3	9	9	1	1	8	6	6	0.65	133589842	133493184	tier1	Out-of-frame	111	NA	0.3897
LUSC	TCGA-66-2755-01A	TCGA-66-2755	ABL1\|CCBL1	ABL1	CCBL1	9	9	1	-1	3	4	4	1.5	133589842	131607690	tier1	CDS-5UTR	108	NA	0.39029
PCPG	TCGA-RW-A8AZ-01A	TCGA-RW-A8AZ	PCSK5\|COL18A1	PCSK5	COL18A1	9	21	1	1	2	1	1	0.18	78547399	46888156	tier2	Out-of-frame	12440	NA	0.37047
LUAD	TCGA-MP-A4TK-01A	TCGA-MP-A4TK	PCSK5\|OSTF1	PCSK5	OSTF1	9	9	1	1	17	13	12	1.6	78506289	77761599	tier1	Out-of-frame	12443	NA	0.3701
SARC	TCGA-3B-A9HS-01A	TCGA-3B-A9HS	PCSK5\|DENND1A	PCSK5	DENND1A	9	9	1	-1	32	16	16	0.49	78641953	126641300	tier1	In-frame	12442	NA	0.35957

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