Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PAAD | TCGA-HV-A5A6-01A | TCGA-HV-A5A6 | FKBP5|ANKS1A | FKBP5 | ANKS1A | 6 | 6 | -1 | 1 | 4 | 4 | 4 | 0.14 | 35586873 | 34935016 | tier1 | Out-of-frame | 6551 | NA | 0.38199 |
| STAD | TCGA-VQ-A925-01A | TCGA-VQ-A925 | SRPK1|CCND3 | SRPK1 | CCND3 | 6 | 6 | -1 | -1 | 17 | 65 | 59 | 1.4 | 35888245 | 41908323 | tier1 | Out-of-frame | 16867 | NA | 0 |
| TGCT | TCGA-SB-A6J6-01A | TCGA-SB-A6J6 | SRPK1|CCL18 | SRPK1 | CCL18 | 6 | 17 | -1 | 1 | 26 | 37 | 36 | 2.6 | 35888245 | 34397807 | tier4 | Out-of-frame | 16866 | NA | 0 |
| BRCA | TCGA-EW-A6SD-01A | TCGA-EW-A6SD | SRPK1|ANKRD42 | SRPK1 | ANKRD42 | 6 | 11 | -1 | 1 | 18 | 12 | 11 | 0.016 | 35888245 | 82938789 | tier1 | Out-of-frame | 16863 | NA | 0 |
| BRCA | TCGA-BH-A5IZ-01A | TCGA-BH-A5IZ | SRPK1|DDAH1 | SRPK1 | DDAH1 | 6 | 1 | -1 | -1 | 39 | 42 | 39 | 0.66 | 35836787 | 85824530 | tier1 | In-frame | 16869 | NA | 0 |
| COAD | TCGA-AA-3655-01A | TCGA-AA-3655 | SRPK1|BAI3 | SRPK1 | BAI3 | 6 | 6 | -1 | 1 | 2 | 1 | 1 | 0.98 | 35888245 | 69347283 | tier2 | CDS-5UTR | 16864 | NA | 0 |
| LUSC | TCGA-94-7033-01A | TCGA-94-7033 | SRPK1|CEP57L1 | SRPK1 | CEP57L1 | 6 | 6 | -1 | 1 | 58 | 42 | 40 | 0.18 | 35810312 | 109481775 | tier1 | Out-of-frame | 16868 | NA | 0 |
| PRAD | TCGA-KK-A8I9-01A | TCGA-KK-A8I9 | SRPK1|CCHCR1 | SRPK1 | CCHCR1 | 6 | 6 | -1 | -1 | 2 | 3 | 1 | 1.7 | 35888245 | 31111190 | tier3 | Out-of-frame | 16865 | NA | 0 |
| UCEC | TCGA-BK-A26L-01A | TCGA-BK-A26L | SRPK1|PXT1 | SRPK1 | PXT1 | 6 | 6 | -1 | -1 | 4 | 13 | 6 | 1.2 | 35806114 | 36359651 | tier1 | Out-of-frame | 16870 | validated | 0 |
| BRCA | TCGA-E2-A1B0-01A | TCGA-E2-A1B0 | BRPF3|HLA-DMA | BRPF3 | HLA-DMA | 6 | 6 | 1 | -1 | 4 | 6 | 6 | 2.9 | 36172591 | 32918580 | tier1 | Out-of-frame | 2227 | NA | 0.36991 |
| GBM | TCGA-76-4925-01A | TCGA-76-4925 | BRPF3|STARD9 | BRPF3 | STARD9 | 6 | 15 | 1 | 1 | 2 | 7 | 6 | 0.023 | 36185787 | 42987941 | tier2 | Out-of-frame | 2228 | NA | 0.36464 |
| LUAD | TCGA-05-4418-01A | TCGA-05-4418 | BRPF3|ZFAND3 | BRPF3 | ZFAND3 | 6 | 6 | 1 | 1 | 2 | 1 | 1 | 0.21 | 36185787 | 37897735 | tier4 | In-frame | 2230 | NA | 0.3567 |
| SARC | TCGA-PC-A5DN-01A | TCGA-PC-A5DN | BRPF3|UNC119B | BRPF3 | UNC119B | 6 | 12 | 1 | 1 | 3 | 3 | 3 | 0.006 | 36164747 | 121157723 | tier1 | 5UTR-CDS | 2229 | NA | 0.35652 |
| PAAD | TCGA-HZ-A49H-01A | TCGA-HZ-A49H | PGC|CHGB | PGC | CHGB | 6 | 20 | -1 | 1 | 2 | 1274 | 1 | 0.43 | 41704450 | 5905618 | tier4 | NA | 12659 | NA | 0.36246 |
| BRCA | TCGA-BH-A0WA-01A | TCGA-BH-A0WA | HSP90AB1|SLC29A1 | HSP90AB1 | SLC29A1 | 6 | 6 | 1 | 1 | 216 | 197 | 176 | 0.82 | 44214932 | 44195000 | tier1 | 5UTR-5UTR | 7985 | non-validated | 0.36685 |
| BRCA | TCGA-AR-A0TV-01A | TCGA-AR-A0TV | HSP90AB1|TAF3 | HSP90AB1 | TAF3 | 6 | 10 | 1 | 1 | 2 | 5 | 1 | 0.13 | 44221599 | 8017036 | tier4 | NA | 7986 | NA | 0.36972 |
| BRCA | TCGA-EW-A1P4-01A | TCGA-EW-A1P4 | ITPR3|AL353597.1 | ITPR3 | AL353597.1 | 6 | 6 | 1 | 1 | 2 | 4 | 4 | 0.38 | 33627326 | 37502052 | tier3 | In-frame | 8457 | NA | 0.3668 |
| STAD | TCGA-FP-8631-01A | TCGA-FP-8631 | ITPR3|SYNGAP1 | ITPR3 | SYNGAP1 | 6 | 6 | 1 | 1 | 6 | 5 | 5 | 0.59 | 33646616 | 33391254 | tier4 | Out-of-frame | 8458 | NA | 0.38126 |
| LUAD | TCGA-69-7978-01A | TCGA-69-7978 | SIRT1|CELF2 | SIRT1 | CELF2 | 10 | 10 | 1 | 1 | 5 | 4 | 4 | 0.39 | 69651312 | 11299701 | tier1 | Out-of-frame | 15958 | NA | 0 |
| LUSC | TCGA-85-A50M-01A | TCGA-85-A50M | SIRT1|DNAJC12 | SIRT1 | DNAJC12 | 10 | 10 | 1 | -1 | 159 | 69 | 64 | 0.6 | 69651312 | 69583150 | tier1 | In-frame | 15959 | NA | 0 |
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