Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| UCEC | TCGA-AX-A3FW-01A | TCGA-AX-A3FW | ESR1|C6orf97 | ESR1 | C6orf97 | 6 | 6 | 1 | 1 | 3 | 1 | 1 | 0.35 | 152023140 | 151936578 | tier2 | 5UTR-CDS | 5819 | NA | 0 |
| UCEC | TCGA-BK-A139-01A | TCGA-BK-A139 | ESR1|SYNE1 | ESR1 | SYNE1 | 6 | 6 | 1 | -1 | 3 | 37 | 35 | 0.15 | 152265643 | 152694354 | tier1 | Out-of-frame | 5831 | validated | 0.38687 |
| UCS | TCGA-NG-A4VU-01A | TCGA-NG-A4VU | ESR1|C6orf97 | ESR1 | C6orf97 | 6 | 6 | 1 | 1 | 5 | 1 | 1 | 0.35 | 152023140 | 151936578 | tier2 | 5UTR-CDS | 5827 | NA | 0 |
| PRAD | TCGA-CH-5739-01A | TCGA-CH-5739 | CCDC80|ANKS1A | CCDC80 | ANKS1A | 3 | 6 | -1 | 1 | 2 | 1 | 1 | 0.087 | 112324113 | 34977682 | tier4 | NA | 3181 | NA | 0.37278 |
| HNSC | TCGA-CQ-6222-01A | TCGA-CQ-6222 | SUPT16H|CHD8 | SUPT16H | CHD8 | 14 | 14 | -1 | -1 | 3 | 1 | 1 | 0.009 | 21852021 | 21878147 | tier4 | In-frame | 17185 | NA | 0 |
| BRCA | TCGA-D8-A1XZ-01A | TCGA-D8-A1XZ | TRPM7|C15orf33 | TRPM7 | C15orf33 | 15 | 15 | -1 | -1 | 2 | 2 | 2 | 0.06 | 50923614 | 49663596 | tier2 | In-frame | 18733 | NA | 0 |
| BRCA | TCGA-C8-A1HI-01A | TCGA-C8-A1HI | TRPM7|TMEM104 | TRPM7 | TMEM104 | 15 | 17 | -1 | 1 | 21 | 13 | 10 | 1.8 | 50949978 | 72832066 | tier1 | Out-of-frame | 18735 | NA | 0 |
| SARC | TCGA-DX-A8BS-01A | TCGA-DX-A8BS | TRPM7|TEPP | TRPM7 | TEPP | 15 | 16 | -1 | 1 | 21 | 15 | 13 | 0.57 | 50955164 | 58018207 | tier1 | Out-of-frame | 18734 | NA | 0 |
| THCA | TCGA-EM-A1YD-01A | TCGA-EM-A1YD | COL9A3|ELK3 | COL9A3 | ELK3 | 20 | 12 | 1 | 1 | 2 | 1 | 1 | 0.11 | 61472511 | 96588323 | tier3 | 3UTR-5UTR | 4048 | NA | 0.37651 |
| ACC | TCGA-OR-A5JY-01A | TCGA-OR-A5JY | COMT|YPEL1 | COMT | YPEL1 | 22 | 22 | 1 | -1 | 48 | 18 | 15 | 0.11 | 19951822 | 22065197 | tier1 | CDS-5UTR | 4059 | NA | 0.35329 |
| SKCM | TCGA-EE-A184-06A | TCGA-EE-A184 | COMT|ZDHHC11 | COMT | ZDHHC11 | 22 | 5 | 1 | -1 | 34 | 63 | 58 | 0.018 | 19929420 | 825366 | tier1 | 5UTR-CDS | 4060 | NA | 0.35445 |
| CESC | TCGA-DS-A5RQ-01A | TCGA-DS-A5RQ | CBX5|NFE2 | CBX5 | NFE2 | 12 | 12 | -1 | -1 | 4 | 6 | 6 | 0.75 | 54645825 | 54689088 | tier1 | CDS-5UTR | 3090 | NA | 0.36888 |
| KIRC | TCGA-BP-4761-01A | TCGA-BP-4761 | CBX5|NFE2 | CBX5 | NFE2 | 12 | 12 | -1 | -1 | 10 | 6 | 6 | 0.75 | 54639899 | 54689088 | tier1 | CDS-5UTR | 3089 | NA | 0.36888 |
| UCEC | TCGA-EO-A3KW-01A | TCGA-EO-A3KW | CBX5|WDTC1 | CBX5 | WDTC1 | 12 | 1 | -1 | 1 | 13 | 12 | 7 | 0.57 | 54673792 | 27608730 | tier1 | 5UTR-CDS | 3091 | NA | 0.37313 |
| BLCA | TCGA-UY-A78K-01A | TCGA-UY-A78K | MAP3K1|OR4N2 | MAP3K1 | OR4N2 | 5 | 14 | 1 | 1 | 4 | 5 | 4 | 2.8 | 56155742 | 20201528 | tier1 | NA | 9848 | NA | 0.37794 |
| BRCA | TCGA-E9-A22E-01A | TCGA-E9-A22E | MAP3K1|PARN | MAP3K1 | PARN | 5 | 16 | 1 | -1 | 6 | 21 | 20 | 0.063 | 56111882 | 14540938 | tier1 | In-frame | 9849 | NA | 0.3726 |
| SARC | TCGA-DX-A3M1-01A | TCGA-DX-A3M1 | CRAT|TTLL11 | CRAT | TTLL11 | 9 | 9 | -1 | -1 | 43 | 29 | 24 | 0.091 | 131859529 | 124633027 | tier1 | Out-of-frame | 4185 | validated | 0.33911 |
| UVM | TCGA-VD-A8KD-01A | TCGA-VD-A8KD | CRTAC1|CCT5 | CRTAC1 | CCT5 | 10 | 5 | -1 | 1 | 2 | 19 | 17 | 0.38 | 99624758 | 10250033 | tier3 | 3UTR-5UTR | 4241 | NA | 0.36813 |
| TGCT | TCGA-2G-AAGC-01A | TCGA-2G-AAGC | FKBP5|SRPK1 | FKBP5 | SRPK1 | 6 | 6 | -1 | -1 | 2 | 2 | 2 | 0.35 | 35656581 | 35858790 | tier4 | 5UTR-CDS | 6553 | NA | 0.38392 |
| BLCA | TCGA-KQ-A41S-01A | TCGA-KQ-A41S | FKBP5|BYSL | FKBP5 | BYSL | 6 | 6 | -1 | 1 | 3 | 1 | 1 | 1.9 | 35656581 | 41897870 | tier2 | 5UTR-CDS | 6552 | NA | 0.37865 |
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