Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the PDGs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| BRCA | TCGA-A2-A0YG-01A | TCGA-A2-A0YG | ESR1|C6orf97 | ESR1 | C6orf97 | 6 | 6 | 1 | 1 | 4 | 5 | 5 | 0.35 | 152023140 | 151859180 | tier1 | 5UTR-CDS | 5810 | non-validated | 0 |
| BRCA | TCGA-A2-A25B-01A | TCGA-A2-A25B | ESR1|C6orf97 | ESR1 | C6orf97 | 6 | 6 | 1 | 1 | 2 | 2 | 2 | 0.35 | 152023140 | 151869439 | tier4 | 5UTR-CDS | 5811 | validated | 0 |
| BRCA | TCGA-A2-A4S3-01A | TCGA-A2-A4S3 | ESR1|C6orf97 | ESR1 | C6orf97 | 6 | 6 | 1 | 1 | 8 | 10 | 10 | 0.35 | 152023140 | 151936578 | tier1 | 5UTR-CDS | 5812 | NA | 0 |
| BRCA | TCGA-A7-A4SC-01A | TCGA-A7-A4SC | ESR1|C6orf97 | ESR1 | C6orf97 | 6 | 6 | 1 | 1 | 6 | 4 | 4 | 0.35 | 152023140 | 151917470 | tier1 | 5UTR-CDS | 5813 | NA | 0 |
| BRCA | TCGA-AC-A8OS-01A | TCGA-AC-A8OS | ESR1|C6orf97 | ESR1 | C6orf97 | 6 | 6 | 1 | 1 | 8 | 8 | 8 | 0.35 | 152023140 | 151894309 | tier1 | 5UTR-CDS | 5814 | NA | 0 |
| BRCA | TCGA-AR-A24R-01A | TCGA-AR-A24R | ESR1|C6orf97 | ESR1 | C6orf97 | 6 | 6 | 1 | 1 | 36 | 34 | 33 | 0.35 | 152129499 | 151857453 | tier1 | Out-of-frame | 5818 | NA | 0 |
| BRCA | TCGA-BH-A0B1-01A | TCGA-BH-A0B1 | ESR1|C6orf97 | ESR1 | C6orf97 | 6 | 6 | 1 | 1 | 3 | 2 | 2 | 0.35 | 152023140 | 151865707 | tier1 | 5UTR-CDS | 5820 | NA | 0 |
| BRCA | TCGA-BH-A0C0-01A | TCGA-BH-A0C0 | ESR1|C6orf97 | ESR1 | C6orf97 | 6 | 6 | 1 | 1 | 11 | 11 | 1 | 0.35 | 152023140 | 151907024 | tier2 | 5UTR-CDS | 5821 | NA | 0 |
| BRCA | TCGA-BH-A0HY-01A | TCGA-BH-A0HY | ESR1|C6orf97 | ESR1 | C6orf97 | 6 | 6 | 1 | 1 | 3 | 2 | 2 | 0.35 | 152023140 | 151857453 | tier1 | 5UTR-CDS | 5822 | NA | 0 |
| BRCA | TCGA-BH-A18R-01A | TCGA-BH-A18R | ESR1|C6orf97 | ESR1 | C6orf97 | 6 | 6 | 1 | 1 | 41 | 30 | 27 | 0.35 | 152023140 | 151857453 | tier1 | 5UTR-CDS | 5823 | validated | 0 |
| BRCA | TCGA-D8-A1JP-01A | TCGA-D8-A1JP | ESR1|C6orf97 | ESR1 | C6orf97 | 6 | 6 | 1 | 1 | 20 | 17 | 16 | 0.35 | 152011799 | 151936578 | tier1 | 5UTR-CDS | 5824 | NA | 0 |
| BRCA | TCGA-D8-A1XA-01A | TCGA-D8-A1XA | ESR1|C6orf97 | ESR1 | C6orf97 | 6 | 6 | 1 | 1 | 2 | 1 | 1 | 0.35 | 152023140 | 151894309 | tier2 | 5UTR-CDS | 5825 | NA | 0 |
| BRCA | TCGA-D8-A27N-01A | TCGA-D8-A27N | ESR1|C6orf97 | ESR1 | C6orf97 | 6 | 6 | 1 | 1 | 19 | 21 | 12 | 0.35 | 152201906 | 151857453 | tier1 | Out-of-frame | 5826 | NA | 0 |
| BRCA | TCGA-BH-A5J0-01A | TCGA-BH-A5J0 | ESR1|MTHFD1L | ESR1 | MTHFD1L | 6 | 6 | 1 | 1 | 16 | 8 | 8 | 0.83 | 152265643 | 151330955 | tier1 | In-frame | 5828 | NA | 0.38574 |
| BRCA | TCGA-A8-A06Q-01A | TCGA-A8-A06Q | ESR1|USP25 | ESR1 | USP25 | 6 | 21 | 1 | 1 | 12 | 7 | 7 | 1.2 | 152163922 | 17138316 | tier1 | Out-of-frame | 5833 | NA | 0.39081 |
| LUSC | TCGA-66-2788-01A | TCGA-66-2788 | ESR1|TFB1M | ESR1 | TFB1M | 6 | 6 | 1 | -1 | 11 | 17 | 15 | 1.1 | 152265643 | 155581534 | tier1 | Out-of-frame | 5832 | NA | 0.38408 |
| SARC | TCGA-HB-A3YV-01A | TCGA-HB-A3YV | ESR1|SIM1 | ESR1 | SIM1 | 6 | 6 | 1 | -1 | 7 | 3 | 2 | 0.16 | 152023140 | 100841765 | tier1 | 5UTR-CDS | 5830 | NA | 0.38717 |
| UCEC | TCGA-AJ-A3EJ-01A | TCGA-AJ-A3EJ | ESR1|C6orf97 | ESR1 | C6orf97 | 6 | 6 | 1 | 1 | 8 | 2 | 2 | 0.35 | 152023140 | 151917470 | tier1 | 5UTR-CDS | 5815 | NA | 0 |
| UCEC | TCGA-AJ-A3EM-01A | TCGA-AJ-A3EM | ESR1|C6orf97 | ESR1 | C6orf97 | 6 | 6 | 1 | 1 | 5 | 1 | 1 | 0.35 | 152023140 | 151894309 | tier2 | 5UTR-CDS | 5816 | NA | 0 |
| UCEC | TCGA-AP-A5FX-01A | TCGA-AP-A5FX | ESR1|C6orf97 | ESR1 | C6orf97 | 6 | 6 | 1 | 1 | 3 | 1 | 1 | 0.35 | 152023140 | 151857453 | tier2 | 5UTR-CDS | 5817 | NA | 0 |
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