TCDA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the PDGs in each cancer type

Show entries each page Jump to page Total Page: 541 Total entries: 10811
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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
BLCA	TCGA-G2-A2EF-01A	TCGA-G2-A2EF	TXNL1\|LRP1B	TXNL1	LRP1B	18	2	-1	-1	4	6	5	1.2	54305574	141299540	tier1	Out-of-frame	18990	NA	0
LAML	TCGA-AB-2846-03A	TCGA-AB-2846	ABCC6\|C16orf70	ABCC6	C16orf70	16	16	-1	1	2	1	1	0.52	16253339	67165189	tier2	In-frame	70	NA	0
PRAD	TCGA-KK-A6E5-01A	TCGA-KK-A6E5	ITGA6\|MYO3B	ITGA6	MYO3B	2	2	1	1	3	1	1	0.11	173292698	171191895	tier2	Out-of-frame	8384	NA	0.37577
STAD	TCGA-BR-7901-01A	TCGA-BR-7901	ITGA6\|HAT1	ITGA6	HAT1	2	2	1	1	2	7	7	4.2	173292698	172809399	tier4	In-frame	8383	NA	0.36894
HNSC	TCGA-D6-A4Z9-01A	TCGA-D6-A4Z9	ITGA6\|UBE3B	ITGA6	UBE3B	2	12	1	1	2	1	1	4.2	173371002	109919442	tier3	3UTR-5UTR	8385	NA	0.37459
BRCA	TCGA-D8-A140-01A	TCGA-D8-A140	AC013461.1\|RAPGEF4	AC013461.1	RAPGEF4	2	2	1	1	5	2	2	1.1	173955918	173825488	tier1	In-frame	175	NA	0.35609
LIHC	TCGA-BC-A10T-01A	TCGA-BC-A10T	AC013461.1\|RAPGEF4	AC013461.1	RAPGEF4	2	2	1	1	2	6	6	1.1	173955918	173659753	tier2	Out-of-frame	174	NA	0.35609
LIHC	TCGA-GJ-A6C0-01A	TCGA-GJ-A6C0	AC013461.1\|RAPGEF4	AC013461.1	RAPGEF4	2	2	1	1	28	12	11	1.1	173955918	173898642	tier1	In-frame	176	NA	0.35609
LUAD	TCGA-44-4112-01A	TCGA-44-4112	AC013461.1\|RAPGEF4	AC013461.1	RAPGEF4	2	2	1	1	2	2	2	1.1	173955918	173825488	tier3	In-frame	172	non-validated	0.35609
LUSC	TCGA-77-8140-01A	TCGA-77-8140	AC013461.1\|RAPGEF4	AC013461.1	RAPGEF4	2	2	1	1	8	2	2	1.1	173955918	173855538	tier1	In-frame	173	NA	0.35609
LIHC	TCGA-QA-A7B7-01A	TCGA-QA-A7B7	TF\|TYK2	TF	TYK2	3	19	1	-1	2	29	27	0.46	133497635	10491352	tier3	3UTR-5UTR	17692	NA	0
LIHC	TCGA-ED-A459-01A	TCGA-ED-A459	TF\|ARFGEF2	TF	ARFGEF2	3	20	1	1	2	9	8	0.94	133497635	47615777	tier4	3UTR-CDS	17690	non-validated	0
LIHC	TCGA-G3-A6UC-01A	TCGA-G3-A6UC	TF\|CCT5	TF	CCT5	3	5	1	1	2	2	1	0.39	133497635	10250033	tier3	3UTR-5UTR	17691	NA	0
LIHC	TCGA-DD-A4NL-01A	TCGA-DD-A4NL	TF\|UTRN	TF	UTRN	3	6	1	1	2	10	9	4.6	133497635	144665237	tier3	NA	17693	NA	0
PAAD	TCGA-HZ-8003-01A	TCGA-HZ-8003	CPA1\|SCYL1	CPA1	SCYL1	7	11	1	1	2	61	60	0.041	130027929	65293392	tier4	3UTR-CDS	4098	NA	0.36201
UCEC	TCGA-AJ-A3IA-01A	TCGA-AJ-A3IA	ESR1\|PDE7B	ESR1	PDE7B	6	6	1	1	7	3	2	1.3	152129499	136429869	tier1	Out-of-frame	5829	NA	0.38531
BRCA	TCGA-A2-A3KD-01A	TCGA-A2-A3KD	ESR1\|ASPH	ESR1	ASPH	6	8	1	-1	518	607	305	0.029	152201906	62416068	tier2	Out-of-frame	5806	NA	0.38645
BRCA	TCGA-BH-A1EV-01A	TCGA-BH-A1EV	ESR1\|BNC2	ESR1	BNC2	6	9	1	-1	10	4	4	1.4	152163922	16738483	tier1	Out-of-frame	5807	NA	0.38647
BRCA	TCGA-E9-A1NA-01A	TCGA-E9-A1NA	ESR1\|C6orf211	ESR1	C6orf211	6	6	1	1	33	14	14	0.17	152023140	151785588	tier1	5UTR-CDS	5808	NA	0
BRCA	TCGA-A2-A0CT-01A	TCGA-A2-A0CT	ESR1\|C6orf97	ESR1	C6orf97	6	6	1	1	13	19	14	0.35	152023140	151857453	tier1	5UTR-CDS	5809	NA	0

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